Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b02f
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 129 1e-30
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 129 1e-30
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 87 7e-18
08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629... 29 2.0
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567... 28 6.1
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 27 8.0
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 129 bits (312), Expect = 1e-30
Identities = 64/131 (48%), Positives = 83/131 (63%)
Frame = +3
Query: 150 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 329
MN +KLKK+ VR GGKG+ RRKKK VH T TDD VNTIPGIEEVN+
Sbjct: 2 MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIF 61
Query: 330 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSV 509
K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGPD L+ L+R+A
Sbjct: 62 KDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNLRRLAEQF 120
Query: 510 AAPKPLEEDDE 542
P +E
Sbjct: 121 QKQAPGASGEE 131
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 129 bits (312), Expect = 1e-30
Identities = 68/147 (46%), Positives = 91/147 (61%), Gaps = 11/147 (7%)
Frame = +3
Query: 150 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 329
MN +KLKK+ VR GGKG+ RRKKK VH T TDD VN IPGIEEVN+
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 500
Query: 330 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA--- 500
K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGPD L+ L+R+A
Sbjct: 501 KDD-VVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLAEQF 559
Query: 501 --------SSVAAPKPLEEDDEVPNLV 557
+ +A ++DD+VP LV
Sbjct: 560 QKQVPGAEAGASAGNAQDDDDDVPELV 586
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 87.4 bits (207), Expect = 7e-18
Identities = 61/140 (43%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Frame = +3
Query: 186 VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNP 365
VR GGKGT RRKKK VH T TDD VNTIP IEEVN+ K+D VI F NP
Sbjct: 5 VRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLKRVGVNTIPAIEEVNIFKDD-LVIQFVNP 63
Query: 366 KAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRI---------ASSVAAP 518
K+ ++LPGI++QLGPD + LKRI A+ A
Sbjct: 64 -------------------KELQDVLPGIINQLGPDNMEHLKRIAEEMQKQVAAAGATAQ 104
Query: 519 KPLEEDDEVPNLV--GNFDE 572
E DD+VP LV NF+E
Sbjct: 105 AKEENDDDVPELVPGENFEE 124
>08_02_0850 +
21862110-21862394,21862555-21862723,21862901-21862965,
21863632-21863905,21863998-21864145,21864237-21864346,
21864440-21864495,21864568-21864624,21864733-21864876,
21865304-21865351
Length = 451
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 481 FKPSGPSWLRIPGSISVVCLFSPCPVIANVFAAS 380
F P GP W + PGS + +PCP A++F++S
Sbjct: 207 FYPLGPVW-QPPGSSTSKAPSAPCPPSASLFSSS 239
>12_01_0667 +
5674322-5674393,5674455-5675159,5676051-5676087,
5676238-5676335,5676452-5676475
Length = 311
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +3
Query: 87 NSVIKK-CPVLTLTQFTLKNSRMNSEKLKKLQS--QVRIGGKGTPRRKKKVVHVTAAT 251
++V+++ C + + + LK E+LKKL + R GG G P R K +H+ +A+
Sbjct: 241 DAVVQRFCQEVGVKRRVLKYGSGAPEELKKLDFFWERRGGGGGNPLRNKMKIHLASAS 298
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 307 PGIVFTDNFLSDDCSFLSSVAAVT*TTFFLRLGVPLPPMR 188
PG+VF + D FL +V V +GVP PP R
Sbjct: 670 PGLVFDAGY-RDYLQFLCAVPGVDDAAVLRAVGVPCPPSR 708
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,715,468
Number of Sequences: 37544
Number of extensions: 299304
Number of successful extensions: 786
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -