Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b02f
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)                   60   1e-09
SB_26449| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)                    29   2.7  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)                     28   4.7  
SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)                      28   6.2  
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_16014| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_95| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   8.2  

>SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)
          Length = 98

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = +3

Query: 291 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAA 389
           VN IPGIEEVNMIKEDGTVIHFNNPKA+    A
Sbjct: 54  VNPIPGIEEVNMIKEDGTVIHFNNPKAEMGSGA 86


>SB_26449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +3

Query: 528 EEDDEVPNLVGNFDE 572
           +EDDEVP LV NFDE
Sbjct: 10  DEDDEVPELVENFDE 24


>SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)
          Length = 335

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 130 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 32
           NC+    GH   T++ +Y   +YE SM + R H
Sbjct: 139 NCLWTLFGHTLRTVYRHYSDTRYELSMDVIRTH 171



 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 130 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMHVF*T 20
           NC+    GH   T++  Y   +YE SM + R H   T
Sbjct: 244 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTHTLRT 280



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 130 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 32
           NC+    GH   T++  Y   +YE SM + R H
Sbjct: 10  NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 42



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 130 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 32
           NC+    GH   T++  Y   +YE SM + R H
Sbjct: 45  NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 77



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 130 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 32
           NC+    GH   T++  Y   +YE SM + R H
Sbjct: 80  NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 112



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 130 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 32
           NC+    GH   T++  Y   +YE SM + R H
Sbjct: 209 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 241



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 130 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 32
           NC+    GH   T++  Y    YE SM + R H
Sbjct: 174 NCLWTLFGHTLRTVYGRYSDTHYELSMDVIRTH 206


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
 Frame = +3

Query: 99  KKCPV--LTLTQFTLKNSRMNS--EKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXX 266
           KK P   L  T + L  S++ +  E +    S+      G   ++ K V  T  TDD   
Sbjct: 123 KKVPASKLDTTSYELDGSKIGTVPESINSYDSE-----PGMKEKESKCVETTDTTDDGTK 177

Query: 267 XXXXXXXXVNTIPGIEEVNMIKED-GTVIHFNNPKAQASLAANTFAITGHGENKQ 428
                     T PG + + +IKE        NN K   ++  +   I   GEN Q
Sbjct: 178 TMNDLSENSETTPG-QTITIIKEHMPNTPQENNSKVDTTIGQSK-EIVVEGENTQ 230


>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1488

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 219 CVSVCP-YRRCVLATGVSLIFRCSFCC 142
           C S+C  Y RCV+   V++   CS  C
Sbjct: 639 CTSICHRYGRCVMLANVTMFCNCSRAC 665


>SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)
          Length = 554

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 130 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 32
           NC+    GH   T++  Y   +YE SM + R H
Sbjct: 58  NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 90


>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 264 VFCHLWPQ*-REQPSSCVSVCPY 199
           VF  +WP+  RE P+SC+S  P+
Sbjct: 734 VFAFIWPRFYREAPASCISELPW 756


>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 363 PKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 470
           P     L ANT  ITG G++ +  ++ P I+  LGP
Sbjct: 248 PMRYPDLCANTLFITGKGQHHRQIKLQP-IVRALGP 282


>SB_16014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 96  IKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPR 215
           I   P+L  T+F+ +N+++  EK    Q+ V  G +  P+
Sbjct: 73  IDNLPILLFTRFSCRNTQVREEKNLTSQNCVESGNEKIPK 112


>SB_95| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +3

Query: 366 KAQASLAANTFA-ITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPK 521
           K   + A N F     H +NK +   L  +L Q+G D   R   +  SV   K
Sbjct: 117 KGNVAAARNCFVGALSHSKNKASLRNLSMVLRQIGSDSKERADNVRLSVEKAK 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,481,914
Number of Sequences: 59808
Number of extensions: 359795
Number of successful extensions: 949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)