Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b02f
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17880.1 68414.m02212 nascent polypeptide-associated complex ...   131   3e-31
At1g73230.1 68414.m08475 nascent polypeptide-associated complex ...   129   1e-30
At2g43110.1 68415.m05352 expressed protein                             33   0.18 
At5g47690.1 68418.m05887 expressed protein                             32   0.31 
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r...    28   3.8  
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-...    28   5.1  
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '...    28   5.1  
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '...    28   5.1  
At4g22780.1 68417.m03288 ACT domain-containing protein (ACR7) lo...    27   6.7  

>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
           (NAC) domain-containing protein / BTF3b-like
           transcription factor, putative similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain; identical to cDNA
           BTF3b-like factor GI:5912423
          Length = 165

 Score =  131 bits (317), Expect = 3e-31
 Identities = 71/148 (47%), Positives = 94/148 (63%), Gaps = 11/148 (7%)
 Frame = +3

Query: 150 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 329
           MN EKL K+ + VR GGKGT RRKKK VH T  TDD           VN+IP IEEVN+ 
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 330 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA--- 500
           K+D  VI F NPK QAS+AANT+ ++G  + K+  ++LP I+SQLGPD ++ LK++A   
Sbjct: 61  KDD-VVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQF 119

Query: 501 --------SSVAAPKPLEEDDEVPNLVG 560
                   ++ +A    E+DD+VP LVG
Sbjct: 120 QKQASGEGNAASATIQEEDDDDVPELVG 147


>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain
          Length = 165

 Score =  129 bits (312), Expect = 1e-30
 Identities = 70/147 (47%), Positives = 91/147 (61%), Gaps = 11/147 (7%)
 Frame = +3

Query: 150 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 329
           MN EKL K+ + VR GGKGT RRKKK VH T  TDD           VN+IP IEEVN+ 
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 330 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSV 509
           K+D  VI F NPK QAS+AANT+ ++G  + K+  ++LP I+SQLGPD L+ LK++A   
Sbjct: 61  KDD-VVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQF 119

Query: 510 AAPKP-----------LEEDDEVPNLV 557
               P            ++DD+VP+LV
Sbjct: 120 QKQAPGAGDVPATIQEEDDDDDVPDLV 146


>At2g43110.1 68415.m05352 expressed protein 
          Length = 288

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 21/54 (38%), Positives = 31/54 (57%)
 Frame = +3

Query: 84  LNSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA 245
           L+S+ K+CP + L    LK      E++  L+ +V IG  GTP R KK+V + A
Sbjct: 172 LHSLTKQCPAVKLFSKHLKVE----EQVSLLKKRVNIGS-GTPNRIKKLVDIEA 220


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -2

Query: 488 QSVQAVGSELAEDTREHLCGLLILPVSGNRERVR-GQRRLCLRVVK 354
           Q++  V  E +ED +EHL  +L+  +  NR  VR   RRL ++V++
Sbjct: 172 QNIMIVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIE 217


>At3g59820.1 68416.m06675 calcium-binding mitochondrial
           protein-related contains weak similarity to
           Calcium-binding mitochondrial protein Anon-60Da
           (Swiss-Prot:P91927) [Drosophila melanogaster]
          Length = 755

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 29/94 (30%), Positives = 43/94 (45%)
 Frame = +3

Query: 291 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 470
           V T P  E  +  + DG ++   N     S   + F  +G G    ++E+ P     LG 
Sbjct: 51  VETKPVTEHKSFTRRDGLLLLSRNGYFNRSF--HGFHSSGFGYG--SSEVGPS----LGM 102

Query: 471 DGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDE 572
             ++   R A++VAA KP EED +V  L  N  E
Sbjct: 103 RYMSLSIRNATTVAAKKPEEEDKKVDELAKNRKE 136


>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
           / HD-ZIP transcription factor 13 identical to homeobox
           gene 13 protein (GP:12325190) [Arabidopsis thaliana]
          Length = 294

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 123 TQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 230
           +Q   K  R+N E++K L+    +G K  P RK ++
Sbjct: 80  SQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQL 115


>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
            'Morpheus molecule') [Arabidopsis thaliana]
            gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 214  DARRRLFTLLRPQMTKNCS--HRSKSC 288
            +++RRL T+L+P+M K C   H S +C
Sbjct: 948  ESQRRLHTVLKPKMAKLCQVLHLSDAC 974


>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
            'Morpheus molecule') [Arabidopsis thaliana]
            gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 214  DARRRLFTLLRPQMTKNCS--HRSKSC 288
            +++RRL T+L+P+M K C   H S +C
Sbjct: 948  ESQRRLHTVLKPKMAKLCQVLHLSDAC 974


>At4g22780.1 68417.m03288 ACT domain-containing protein (ACR7) low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 449

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
 Frame = +3

Query: 210 PRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGI--EEVNMIKEDGTVIHFNNPKAQASL 383
           P R++ +  + AA +                PG+  E   +++E+G  I       + S+
Sbjct: 302 PERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVTRILRENGLNIARAEISTKDSI 361

Query: 384 AANTFAITGHGENKQTTEMLPGILSQLGPDGLN 482
           A N F +T    N    E++  I  ++G D L+
Sbjct: 362 ARNVFYVTDANGNLIDPEIIKSIREKIGIDDLS 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,729,602
Number of Sequences: 28952
Number of extensions: 232930
Number of successful extensions: 654
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)