Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b01r
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26930.1 68416.m03369 hypothetical protein                          28   5.6  
At1g26930.1 68414.m03283 kelch repeat-containing F-box family pr...    28   5.6  
At3g61710.1 68416.m06915 autophagy protein Apg6 family contains ...    27   9.8  
At1g63110.3 68414.m07131 cell division cycle protein-related con...    27   9.8  
At1g63110.2 68414.m07132 cell division cycle protein-related con...    27   9.8  
At1g63110.1 68414.m07130 cell division cycle protein-related con...    27   9.8  

>At3g26930.1 68416.m03369 hypothetical protein
          Length = 409

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 602 IFNYDDFLWNLCRSINKRKKECTKDKLLTRNNI 504
           +FN + F+W  C+ I + +KE  K  L   N +
Sbjct: 323 LFNLETFIWKGCKRIGEDEKEVAKYILRNTNRL 355


>At1g26930.1 68414.m03283 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 421

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 602 IFNYDDFLWNLCRSINKRKKECT 534
           ++NY+D  W +   +NKR+K C+
Sbjct: 232 LYNYEDQTWLVLPGMNKRRKMCS 254


>At3g61710.1 68416.m06915 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 517

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = +2

Query: 482 LKVYLHTKYYCA*VIYLWCILFFVCLLNDINSRENHHN*RYLKVFYELRHNKIM*IKYIN 661
           + ++  T+Y  A  +YL C+  F    N  +   N      L + Y++  +K++      
Sbjct: 391 VNLFWSTRYDKAMTLYLMCLKDFADFANSKDQENNIPPDNCLNLPYKIEKDKVLGYSITQ 450

Query: 662 HIFKIESDTKVL 697
              K ES TK L
Sbjct: 451 SFNKQESWTKAL 462


>At1g63110.3 68414.m07131 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 407

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 359 LCELTPNKQGSVETLVRFTYNYVNDVSNL 273
           LC L+ NK G +E + + TY ++  + +L
Sbjct: 218 LCALSLNKYGGLEEMFKRTYGFILSIEDL 246


>At1g63110.2 68414.m07132 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 397

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 359 LCELTPNKQGSVETLVRFTYNYVNDVSNL 273
           LC L+ NK G +E + + TY ++  + +L
Sbjct: 208 LCALSLNKYGGLEEMFKRTYGFILSIEDL 236


>At1g63110.1 68414.m07130 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 469

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 359 LCELTPNKQGSVETLVRFTYNYVNDVSNL 273
           LC L+ NK G +E + + TY ++  + +L
Sbjct: 280 LCALSLNKYGGLEEMFKRTYGFILSIEDL 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,770,241
Number of Sequences: 28952
Number of extensions: 237566
Number of successful extensions: 425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)