Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a22r
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P93280 Cluster: Putative cytochrome c biogenesis ccmB-l...    34   2.9  
UniRef50_Q4MZ66 Cluster: Putative uncharacterized protein; n=1; ...    33   8.8  

>UniRef50_P93280 Cluster: Putative cytochrome c biogenesis ccmB-like
           mitochondrial protein; n=151; Streptophytina|Rep:
           Putative cytochrome c biogenesis ccmB-like mitochondrial
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 206

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 241 KQLCTHIHFKICFLCTDKKTFNKFLIYILRK*FLYGFAFGYFCHF 375
           ++L   +++K+ F  T   +F+ FL+YI+    + GF   + CHF
Sbjct: 2   RRLFFELYYKLIFSSTPITSFSLFLLYIVVTPLMLGFEKDFLCHF 46


>UniRef50_Q4MZ66 Cluster: Putative uncharacterized protein; n=1;
           Theileria parva|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 148

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 383 PPLIYTIIYIIFFKVNYLVFFGNYTTFT 466
           PP+   I +I+F+ + Y +FF NY+TFT
Sbjct: 105 PPIYSLITFIVFYYI-YSIFFVNYSTFT 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,820,227
Number of Sequences: 1657284
Number of extensions: 10032140
Number of successful extensions: 20353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20344
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)