Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a22r
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1364| Best HMM Match : 7tm_1 (HMM E-Value=7.39998e-41)              30   1.6  
SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)        29   4.8  
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  

>SB_1364| Best HMM Match : 7tm_1 (HMM E-Value=7.39998e-41)
          Length = 320

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 299 HLINF*STFYGNSFYTVSRL--DTFVIFLRPPLIYTIIYIIFFKVNYLVFFGNYTTFTKR 472
           +L +F    +GN  Y V     DT    +     + +I+   + V +++    YTT   R
Sbjct: 156 YLTSFQVASFGNKIYCVPEWSEDTATNIVTSKAYFVLIFTSLYAVPFVILVALYTTIVIR 215

Query: 473 VDRYK 487
           + RY+
Sbjct: 216 LQRYR 220


>SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)
          Length = 560

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 377 LRPPLIYTIIYIIFFKVNYLVFFGNYTT----FTKRVDRY 484
           LR P I   +Y +FF +  LVFF  +T+    +T  V RY
Sbjct: 425 LRSPGIIRYVYPVFFVMFNLVFFAMFTSCFKPYTSSVSRY 464


>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 270 FKMYVGA*LFFFLIAIV*CNGTWCLFYN 187
           +++Y G  +FF  +A+V C  ++C+ Y+
Sbjct: 71  YRIYFGMFVFFLFMAVVNCQASFCMGYS 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,633,812
Number of Sequences: 59808
Number of extensions: 312978
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)