Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a22f
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 100 2e-22
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 0.93
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 28 1.2
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 27 1.6
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 27 2.1
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 27 2.8
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 27 2.8
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 6.5
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c... 25 8.6
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 100 bits (239), Expect = 2e-22
Identities = 46/93 (49%), Positives = 67/93 (72%)
Frame = +1
Query: 334 VKVCFVLNDGKRLEAEAKIGDTLLDVVVNNDLNIEGYGACEGTLTCSTCHVILKQEDYDR 513
+KV FV +G+ + E GD++LD+ N++++EG ACEG++ CSTCHVI+ E Y+
Sbjct: 519 IKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEG--ACEGSVACSTCHVIVDPEHYEL 576
Query: 514 LPEEPSDEERDMLDLAYGLTDTSRLGCQITLTK 612
L + P ++E DMLDLA+GL +TSRLGCQ+ L K
Sbjct: 577 L-DPPEEDEEDMLDLAFGLEETSRLGCQVLLRK 608
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 28.3 bits (60), Expect = 0.93
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Frame = -2
Query: 335 TFSSFNARLLVENGTIRFE---SIQLLPKSLNLNK*RNLEQD-KFLTVLNIFTSYFLIQP 168
TF+SF R+L+++ E +Q L ++L ++ +++ K LTV ++F + F+IQP
Sbjct: 1591 TFNSFPLRVLLDSKLSFAEVCGQLQRLKETLQEHQMTSVQSICKSLTVKSLFDTVFIIQP 1650
Query: 167 RQFLSN 150
Q LS+
Sbjct: 1651 -QLLSD 1655
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 499 PASVSHGKWNRS--GYPHRPRSPQYLDRCSRPRPEVYHRSSPLLPTS 365
P ++ K NR GYP+ Q + S P V+ PL+PTS
Sbjct: 51 PFCLNCTKTNRECEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTS 97
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 27.5 bits (58), Expect = 1.6
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 253 NDLGSNCIDSKRIVPFSTSSLALKDEKVKVCFVLNDGKR-LEAEAKIGDTLLDVVVNNDL 429
N+ S+ I+ KR +STSSL K++K+ L GKR AEA+ L V +
Sbjct: 514 NNPSSSQINQKR--SYSTSSLFSKNKKMNRSLFLKGGKRFFSAEAQKTQKPLKAVSSKPA 571
Query: 430 NIEGYGA 450
+ GA
Sbjct: 572 KVVLLGA 578
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 286 RIVPFSTSSLALKDEKVKVCFVLNDGKRL 372
+I+PF+TS + KV VL DGK+L
Sbjct: 6 QIIPFTTSGSLVDYVDRKVIVVLRDGKKL 34
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 517 VIYHNPPASVSHGKWNRSGYPHRPRSPQYL 428
V+ H PP SH YP RP SP+ +
Sbjct: 130 VVNHLPPFPASHTYMATPVYPVRPTSPKQI 159
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 2.8
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Frame = -3
Query: 526 APPVIYHNPPASVSHGKWNRSGYPHRPRSPQYLDRCSRPRPEVYHRSSPL-LPTSSHR-- 356
+PP N ++ W+ S SP+ L+R + ++Y R S LP+ S R
Sbjct: 87 SPPFHLQNQKSNGQSEVWHSSD---DSGSPKRLNRSRSSKEDMYRRRSLHGLPSLSRRNS 143
Query: 355 -----LARSIL*PFRPLTLDYSLKTELYVSNRYNY 266
L+RSI R + SL LY S YN+
Sbjct: 144 KKSSTLSRSISLHLRSESAPISLPIHLYKSYSYNH 178
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 404 RSVSPIFASASNLFPSFSTKHTLTFSSF 321
RS+SPI + S + PSFS L SS+
Sbjct: 858 RSLSPIQNAGSAMLPSFSNLPNLYSSSY 885
>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 8.6
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = -3
Query: 499 PASVSHGKWNR-SGYPHRPRSPQYLDRCSRPRPEVYHRSSPLLPTSSHRLARSIL*PFRP 323
P S G WN G +P Y CS P P Y +L TS + S + P
Sbjct: 108 PDWYSIGLWNYCQGNSSDYTNPTY---CSTPSPSYYFNPLTMLETSINNATGSQINITLP 164
Query: 322 LTLDYSLK 299
+D LK
Sbjct: 165 SEVDLGLK 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,970
Number of Sequences: 5004
Number of extensions: 51721
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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