Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a22f
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0253 + 16116614-16116671,16117194-16117258,16117596-161176... 103 1e-22
07_01_0076 + 562248-562430,562540-562637,562887-562954,563376-56... 103 1e-22
09_04_0724 - 19744807-19745283 45 5e-05
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 32 0.41
09_02_0082 - 4060018-4061604 31 0.95
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 30 1.3
10_01_0270 - 2876907-2877547,2877838-2878012 30 1.7
08_02_1195 - 25149891-25151402,25152194-25152493 29 2.9
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 2.9
02_04_0238 + 21186072-21186883,21187315-21189346 28 5.1
10_07_0160 - 13656172-13656476,13656799-13657528 28 6.7
01_05_0383 + 21667798-21668079 28 6.7
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 27 8.9
03_05_0308 - 22977542-22978174,22978202-22978387 27 8.9
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 27 8.9
02_01_0434 + 3158637-3159319,3159460-3159576,3160064-3160226,316... 27 8.9
01_06_0248 + 27862048-27864310,27864331-27864776 27 8.9
>09_04_0253 +
16116614-16116671,16117194-16117258,16117596-16117663,
16120032-16120138,16120429-16120478,16120552-16120634,
16120708-16120800,16122349-16122379,16122428-16122521,
16122563-16122612
Length = 232
Score = 103 bits (246), Expect = 1e-22
Identities = 48/92 (52%), Positives = 63/92 (68%)
Frame = +1
Query: 325 DEKVKVCFVLNDGKRLEAEAKIGDTLLDVVVNNDLNIEGYGACEGTLTCSTCHVILKQED 504
+ K+ V FV DG+ + IG ++L+ ND+ +EG ACEG+L CSTCHVI+ D
Sbjct: 62 EAKISVTFVDKDGEEKLVKVPIGMSMLEAAHENDIELEG--ACEGSLACSTCHVIVTDVD 119
Query: 505 YDRLPEEPSDEERDMLDLAYGLTDTSRLGCQI 600
Y E+P DEE DMLDLA+GLT+TSRLGCQ+
Sbjct: 120 YYNKLEDPVDEENDMLDLAFGLTETSRLGCQV 151
>07_01_0076 +
562248-562430,562540-562637,562887-562954,563376-563421,
563661-563767,563978-564027,564120-564202,564705-564819
Length = 249
Score = 103 bits (246), Expect = 1e-22
Identities = 47/91 (51%), Positives = 62/91 (68%)
Frame = +1
Query: 328 EKVKVCFVLNDGKRLEAEAKIGDTLLDVVVNNDLNIEGYGACEGTLTCSTCHVILKQEDY 507
EK+ V FV DG +G ++L+ ND+ +EG ACEG+L CSTCHVI+ +Y
Sbjct: 131 EKISVTFVNKDGTEQTISVPVGMSILEAAHENDIELEG--ACEGSLACSTCHVIVMDVNY 188
Query: 508 DRLPEEPSDEERDMLDLAYGLTDTSRLGCQI 600
E+P+DEE DMLDLA+GLT+TSRLGCQ+
Sbjct: 189 YNKLEDPTDEENDMLDLAFGLTETSRLGCQV 219
>09_04_0724 - 19744807-19745283
Length = 158
Score = 44.8 bits (101), Expect = 5e-05
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Frame = +1
Query: 301 STSSLALKDEKVKVCFVLNDGKRLEAEAKIGDTLLDVVVNNDLNIEGYGACEGTLTCST- 477
+ +S + D V++ + DG R E G T+L + N L E CS
Sbjct: 34 AAASAKVADRIVRLLAIDPDGARREVVGLSGQTVLRALANAGLIEPESHRLEEIDACSAE 93
Query: 478 CHVILKQEDYDRLPEEPSDEERDMLDLAYG---LTDTSRLGCQITLT 609
C V + QE D+LP PS EER +L A L +RLGCQ+ LT
Sbjct: 94 CEVHIAQEWLDKLPP-PSYEERYVLTRASRNRELNKHARLGCQVVLT 139
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3
Query: 448 PRSPQYLDRCSRPRPEVYHRSSPLLPTSSHRL 353
P SP Y DRC RP +H S+P L + HRL
Sbjct: 238 PASPIYPDRCRRP----HHPSTPCLHVNLHRL 265
>09_02_0082 - 4060018-4061604
Length = 528
Score = 30.7 bits (66), Expect = 0.95
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 589 RAATYPLG-RMPGPACRVPRRWAPPVIYHNPPA 494
RA T PL R P P RVPR APP+ PA
Sbjct: 394 RATTAPLALRGPAPHLRVPRMLAPPIPMPPAPA 426
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -3
Query: 574 PLGRMPGPACRVPRRWAPPVIYHNPPASVSHGKWNRSGYPHRPRSPQYLDRCSRPRPEVY 395
P + P P + P ++ PP PP++ + GYP P PQ P+P+ Y
Sbjct: 15 PPQQYPYPYGQYPYQYPPPQQQPPPPSAYLSPSRSFHGYPSAP-PPQ-------PQPQPY 66
Query: 394 -HRSSPLLP 371
H S+PL P
Sbjct: 67 AHHSAPLQP 75
>10_01_0270 - 2876907-2877547,2877838-2878012
Length = 271
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = -3
Query: 520 PVIYHNPPASVSHGKWNRSGYP---HRPRSPQYLDRCSRPRPEVYH 392
P YH PP S +H YP + +P Y P P +YH
Sbjct: 178 PAAYHKPPPSYTHPAPPVYSYPTPAYSHPTPVYKQPLPTPSPPIYH 223
>08_02_1195 - 25149891-25151402,25152194-25152493
Length = 603
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -3
Query: 523 PPVIYHNPPASVSHGKWNRSGYPHRPRSPQYLDRCSRPRPEVYHRSSPLLPTSSHRL 353
P I +P A V K S P P+S + CSRPR + H S LLP S ++
Sbjct: 211 PATISRHPEADVDALKNLSSRVP--PQSNYHPSICSRPRQKGPHILSWLLPKSKRKV 265
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 472 NRSGYPHRPRSPQYLDRCSRPRPEVYHRSSPLLPTSSHR 356
+R P R P +R PR R SP+ TSSHR
Sbjct: 232 DRGSPPRRRSPPARRERSPAPRSRSPRRRSPVKTTSSHR 270
>02_04_0238 + 21186072-21186883,21187315-21189346
Length = 947
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 313 LALKDEKVKV-CFVLNDGKRLEAEAKIGDTLLDVVVNNDLNIEGYGACEGTLTCSTCHVI 489
L+LK+ VK+ CF G AEA I ++ + N LNIE + A + + V+
Sbjct: 874 LSLKEAFVKIDCFAAWAGVGNAAEAAIRNSARALPNNPLLNIERFSANDDDMEEDFGFVV 933
Query: 490 LKQEDYDRLPE 522
L + R+P+
Sbjct: 934 LGRRMQQRMPQ 944
>10_07_0160 - 13656172-13656476,13656799-13657528
Length = 344
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 464 RVPSQAP*PSIFRSLFTTTSRSVSPIFASASNLFPS 357
++P+ AP P F SL + SVS +S ++ PS
Sbjct: 44 KIPNNAPHPDFFLSLLSPLPASVSSSLSSPLSISPS 79
>01_05_0383 + 21667798-21668079
Length = 93
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 589 RAATYPLGRMPGPACRVPRRWAPPVIYHNPPASVSHG 479
R YP G +P P ++W+PPV+ +S+ HG
Sbjct: 47 RPKPYPDGGLPDPT----QQWSPPVLTSTIMSSIWHG 79
>12_02_0870 -
23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 307 SLKTELYVSNRYNYFLNH*ILINNEIWSKTNS 212
S EL+ + Y Y L H +L IWSK+ S
Sbjct: 842 SFLKELWPDSLYTYRLGHRLLDGTHIWSKSYS 873
>03_05_0308 - 22977542-22978174,22978202-22978387
Length = 272
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 412 PRPEVYHRSSPLLPTSSHRLARSIL*PFR 326
P PE+ H +PL+PTSS +L S+ P +
Sbjct: 157 PAPEIVH--TPLIPTSSPQLGSSLETPIQ 183
>03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 38 SKHDNLKLYKVKINYLVKIIIFFHV 112
S+ D+ KL K NYL K I FFH+
Sbjct: 994 SEKDSNKLGTTKYNYLTKPIKFFHL 1018
>02_01_0434 +
3158637-3159319,3159460-3159576,3160064-3160226,
3160394-3160600
Length = 389
Score = 27.5 bits (58), Expect = 8.9
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = -3
Query: 568 GRMPGPACRVPRRW----APPVIYHNPPASVSHGKWNRSGYPHRPRSPQYLDRCSRPRPE 401
G P PA P R AP + H PA+V+ + Y +PR PQ R P P
Sbjct: 139 GWRPAPATAGPPRMLVAAAPCGMLH--PAAVARRRGMSKVY--KPRKPQRAGRERSPSPS 194
Query: 400 VYHRSSPLLPT 368
+ P+ PT
Sbjct: 195 PVFTTRPMSPT 205
>01_06_0248 + 27862048-27864310,27864331-27864776
Length = 902
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 519 GGAQRRGTRHAGPGIRPNGYVAARLPDHSD 608
GG R HA G+R GYV +P + D
Sbjct: 813 GGTAIRAAPHAYDGLRARGYVQRWIPSYID 842
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,836
Number of Sequences: 37544
Number of extensions: 350467
Number of successful extensions: 1056
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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