Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a22f
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132862-22|CAB70233.1| 169|Caenorhabditis elegans Hypothetical... 93 1e-19
Z49911-3|CAA90126.2| 735|Caenorhabditis elegans Hypothetical pr... 33 0.21
U97408-2|AAB93342.1| 230|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z84574-8|CAE54891.1| 921|Caenorhabditis elegans Hypothetical pr... 29 3.5
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 3.5
AL022593-4|CAE54889.1| 921|Caenorhabditis elegans Hypothetical ... 29 3.5
Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z67738-2|CAA91546.2| 482|Caenorhabditis elegans Hypothetical pr... 28 4.6
U50310-1|AAA92538.1| 317|Caenorhabditis elegans Hypothetical pr... 28 4.6
AL022593-3|CAA18635.3| 928|Caenorhabditis elegans Hypothetical ... 28 4.6
AC006714-13|ABB88218.1| 269|Caenorhabditis elegans F-box a prot... 28 4.6
Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical pr... 28 6.0
U41746-7|AAK71873.1| 803|Caenorhabditis elegans Hypothetical pr... 28 6.0
>AL132862-22|CAB70233.1| 169|Caenorhabditis elegans Hypothetical
protein Y73F8A.27 protein.
Length = 169
Score = 93.1 bits (221), Expect = 1e-19
Identities = 46/97 (47%), Positives = 62/97 (63%)
Frame = +1
Query: 322 KDEKVKVCFVLNDGKRLEAEAKIGDTLLDVVVNNDLNIEGYGACEGTLTCSTCHVILKQE 501
+DE V + +VL DG + K+GD ++ + D+ +EG ACE +L CSTCHV +
Sbjct: 50 EDEVVNITYVLRDGTERKIRGKVGDNVMFLAHRYDIEMEG--ACEASLACSTCHVYVDPA 107
Query: 502 DYDRLPEEPSDEERDMLDLAYGLTDTSRLGCQITLTK 612
++LPE P +EE DMLD+A L D SRLGCQI LTK
Sbjct: 108 FQNKLPE-PLEEEDDMLDMAPALKDNSRLGCQIVLTK 143
>Z49911-3|CAA90126.2| 735|Caenorhabditis elegans Hypothetical
protein M28.4 protein.
Length = 735
Score = 32.7 bits (71), Expect = 0.21
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = -2
Query: 494 FSITWQVEQVRVPS-QAP*PSIFRSLFTTTSRSVSPI-FASASNLFPSFSTKHTLTFSSF 321
F + W V + VP+ Q ++F S+ + +R+ P+ + + LF S +S+
Sbjct: 410 FILGWFVSAICVPTFQDDNYTMFHSIHVSINRTNGPLDYLNIGKLFTSCRNPRMTLYSAI 469
Query: 320 NARLLVENGTIRFESIQLLPKSLNLNK*RNLEQDKFLTVLNIFTSY 183
L R ES+ + LNLN RN+ +K + + N+ S+
Sbjct: 470 EGEKL-----FRLESVT---EKLNLNAFRNMTNEKIMKLPNLTFSF 507
>U97408-2|AAB93342.1| 230|Caenorhabditis elegans Hypothetical
protein F48A9.2 protein.
Length = 230
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -2
Query: 257 SLNLNK*RNLEQDKFLTVLNIFTSYFLIQPRQF 159
S+ L+K NL ++ FLT LNIF YFL P F
Sbjct: 8 SIELDK--NLAENLFLT-LNIFFKYFLKNPHSF 37
>Z84574-8|CAE54891.1| 921|Caenorhabditis elegans Hypothetical
protein F33E2.2b protein.
Length = 921
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = -3
Query: 499 PASVSHGKWNRSGYPHRPRSPQYLDRCSRPRPEVYHRSSPLLPTSSHRLARS 344
P + S K NRS YP R Q D C S +P +S ARS
Sbjct: 672 PHARSSSKLNRSSYPSRNAPHQLEDGCCCAHARAPRAKSIAVPMTSSSRARS 723
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = -3
Query: 583 ATYPLGRMPGPACRVPRRWAPPVIYHNPPASVSHGKWNRSGYPHRPRSPQ--YLDRCSRP 410
A YP +P PA P + PP PP H YP P +P Y+D S P
Sbjct: 115 APYPQHAVPAPA---PYQQQPP-----PPPPPPHYPPPPPHYPPPPPAPHSAYIDH-SAP 165
Query: 409 RPEVYHRSSP 380
RP S+P
Sbjct: 166 RPAYIEHSAP 175
>AL022593-4|CAE54889.1| 921|Caenorhabditis elegans Hypothetical
protein F33E2.2b protein.
Length = 921
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = -3
Query: 499 PASVSHGKWNRSGYPHRPRSPQYLDRCSRPRPEVYHRSSPLLPTSSHRLARS 344
P + S K NRS YP R Q D C S +P +S ARS
Sbjct: 672 PHARSSSKLNRSSYPSRNAPHQLEDGCCCAHARAPRAKSIAVPMTSSSRARS 723
>Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 28.3 bits (60), Expect = 4.6
Identities = 23/65 (35%), Positives = 26/65 (40%)
Frame = -3
Query: 538 PRRWAPPVIYHNPPASVSHGKWNRSGYPHRPRSPQYLDRCSRPRPEVYHRSSPLLPTSSH 359
P R VI + P S S K NRS YP R Q D C S +P +S
Sbjct: 668 PSRVPHGVISCSSPRSSS--KLNRSSYPSRNAPHQLEDGCCCAHARAPRAKSIAVPMTSS 725
Query: 358 RLARS 344
ARS
Sbjct: 726 SRARS 730
>Z67738-2|CAA91546.2| 482|Caenorhabditis elegans Hypothetical
protein W03G11.3 protein.
Length = 482
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 499 PASVSHGKWNRSGYPHRPRSPQYLDRCSRPRPEV 398
P + GK+N + YP + PQ +D ++ PEV
Sbjct: 173 PMFLDDGKFNTTFYPEQVSYPQMIDIVTKYNPEV 206
>U50310-1|AAA92538.1| 317|Caenorhabditis elegans Hypothetical
protein ZC487.2 protein.
Length = 317
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 301 STSSLALKDEKVKVCFVLNDGKRLEAEAK--IGDTLLDV-VVNNDLNI 435
STSSL L ++ VCF N K +E + IG T+L +++N LN+
Sbjct: 43 STSSLLLLSDQASVCFA-NSSKMIEQTNRTIIGATILVFSLISNFLNV 89
>AL022593-3|CAA18635.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 28.3 bits (60), Expect = 4.6
Identities = 23/65 (35%), Positives = 26/65 (40%)
Frame = -3
Query: 538 PRRWAPPVIYHNPPASVSHGKWNRSGYPHRPRSPQYLDRCSRPRPEVYHRSSPLLPTSSH 359
P R VI + P S S K NRS YP R Q D C S +P +S
Sbjct: 668 PSRVPHGVISCSSPRSSS--KLNRSSYPSRNAPHQLEDGCCCAHARAPRAKSIAVPMTSS 725
Query: 358 RLARS 344
ARS
Sbjct: 726 SRARS 730
>AC006714-13|ABB88218.1| 269|Caenorhabditis elegans F-box a protein
protein 76 protein.
Length = 269
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 274 IDSKRIVPFSTSSLALKDEKVKVCFV 351
ID +++VPF+ + LKDE +C V
Sbjct: 62 IDGEQVVPFNNLDVILKDELDDICVV 87
>Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical
protein K01C8.5 protein.
Length = 707
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 535 RRWAPPVIYHNPPASVSHGKWNRSGYPHRPRSPQYL-DRCSRPRP 404
R W PP PP+S +++S Y R RSP L D RP P
Sbjct: 81 REWDPP-----PPSSHCPQIYHKSQYSRRERSPDILTDDRGRPIP 120
>U41746-7|AAK71873.1| 803|Caenorhabditis elegans Hypothetical
protein T18H9.7a protein.
Length = 803
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 403 LDVVVNNDLNIEGYGACEGTLTCSTCHVILKQ--EDYDRLPEEPSDEE 540
L+ N++ ++G GAC G + S+C+ + +D D+ + D E
Sbjct: 145 LNPTSENEVELKGVGACAGKIFLSSCYSQAPEIVDDRDKQKKNVEDSE 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,460
Number of Sequences: 27780
Number of extensions: 293378
Number of successful extensions: 815
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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