Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a21r
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1548 + 27630988-27631049,27631632-27631767,27631904-276320... 32 0.29
11_06_0231 + 21531169-21531674,21533607-21533681,21535426-21535741 31 0.51
04_04_1290 + 32399905-32399972,32400502-32400571,32400950-324017... 31 0.89
01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296 30 1.2
01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482... 29 2.1
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 29 3.6
08_02_1185 + 25016146-25016422,25017201-25017443,25017551-250176... 29 3.6
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 29 3.6
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 29 3.6
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 28 4.8
05_07_0323 + 29260608-29260836,29262242-29262513,29263349-292634... 28 6.3
11_06_0235 + 21588212-21589029,21589426-21591358 27 8.3
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 27 8.3
03_02_1007 + 13160772-13161311 27 8.3
>07_03_1548 +
27630988-27631049,27631632-27631767,27631904-27632041,
27632168-27632267,27632443-27632552
Length = 181
Score = 32.3 bits (70), Expect = 0.29
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = +3
Query: 192 TAHIGRSCQKDFRCG--PPSTCSGDDSDPDAEANRFCSVANQTIQREP-DFHHSSSNTCP 362
+AH R+ QK CG P + D + A CS+ +T+QRE D H CP
Sbjct: 34 SAHCARNLQKCEHCGYMVPKKLMDEHYDEN-HAPMICSLCQKTVQRELWDLHKGLQ--CP 90
Query: 363 STRPICSCCKRNVGSHSICYHICLLQL 443
C C + + I H ++ L
Sbjct: 91 QRMLACQYCDFELPAADIYEHQNIVSL 117
>11_06_0231 + 21531169-21531674,21533607-21533681,21535426-21535741
Length = 298
Score = 31.5 bits (68), Expect = 0.51
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +3
Query: 150 VSAPRLPLWVGSYCTAHIGRSCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTI 317
+ PRLP+W+ S C H+ SC D + ST D D A C V Q I
Sbjct: 114 ICLPRLPVWMNSICIPHL--SCM-DLKV---STIEASDLDVIARLPALCEVVLQFI 163
>04_04_1290 +
32399905-32399972,32400502-32400571,32400950-32401734,
32403068-32403674
Length = 509
Score = 30.7 bits (66), Expect = 0.89
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 168 PLWVGSYCTAHIGRSCQKDFRCGPPSTCSGDDSDPDAEAN-RFCSVANQTI 317
P+ G Y RS + DF GPP GDD D +A N R S A ++
Sbjct: 390 PIAAGRYAPE---RSGELDFGAGPPEEEDGDDDDDEARNNVRSSSSATMSV 437
>01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296
Length = 416
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 263 VVPTTSGWRTTPKIFLARPPNMCRTVRPDPKWKPGSRNAKT 141
V PT +G +P + + PP+ RT+ PDP W G + + T
Sbjct: 268 VQPTWTG-SNSPCVVNSTPPSPGRTMLPDPAWLAGIQISST 307
>01_07_0036 +
40647046-40647100,40647120-40647571,40648135-40648257,
40648407-40648461,40648613-40648722,40649352-40649531,
40650003-40650101,40651182-40651280,40652195-40652289,
40652290-40652378,40652739-40652901,40653299-40653404,
40655647-40655829,40656059-40656286,40656373-40656486
Length = 716
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +3
Query: 240 PSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPSTRPICSCCKRNVGSHSIC 419
PS C+G D + D N+ CS A + P H + + I C N ++ C
Sbjct: 469 PSYCNGCDCEGDCANNKNCSCAQRNGSDLPYVSHKNIGRLVEPKAIVFECGANCSCNNNC 528
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 150 VSAPRLPLWVGSYCTAHI 203
V PRLP WV S C H+
Sbjct: 698 VDLPRLPAWVNSMCVPHL 715
>08_02_1185 +
25016146-25016422,25017201-25017443,25017551-25017672,
25017760-25017800,25017904-25018002,25018476-25018692
Length = 332
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Frame = -3
Query: 315 WFGW-------LHYKTDLPPHQDPSRPHYKWMADHTENLSGTTA 205
WFGW L+ K D+P + S +KW H + + GTT+
Sbjct: 87 WFGWFAGKEGSLNMKLDMPSRDNFSSMSWKWRGLH-QKIGGTTS 129
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +3
Query: 144 LCVSAPRLPLWVGSYCTAHIGRSCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQ 320
L S P P GS C H + +RCG TC + +D +NR C + I+
Sbjct: 760 LMPSQPDTPAKRGSCCICHQTQVDSLLYRCGHMCTCF-NCADQLKSSNRSCPICQSPIE 817
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 324 EPDFHHSSSNTCPSTRPICSCCKRNVGSHSICYHICL 434
EPD S+ + P+CS C+ + +CY I L
Sbjct: 1205 EPDVSCSTGVVSEESLPVCSLCRDSDSKSPLCYLILL 1241
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 150 VSAPRLPLWVGSYCTAHI 203
V+ PRLP WV S C H+
Sbjct: 749 VTLPRLPSWVNSTCVPHL 766
>05_07_0323 +
29260608-29260836,29262242-29262513,29263349-29263487,
29263581-29263714,29263847-29263970,29264364-29264773
Length = 435
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -3
Query: 348 LNYDGSQVPAEWFGWLHYKTDLP-PH 274
LNYDG Q EW +HY +L PH
Sbjct: 155 LNYDGLQGHDEWVAEIHYLRNLKHPH 180
>11_06_0235 + 21588212-21589029,21589426-21591358
Length = 916
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 144 LCVSAPRLPLWVGSYCTAHI 203
L V PRLP WV S C H+
Sbjct: 756 LHVFLPRLPSWVNSMCIPHL 775
>05_01_0564 -
4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 27.5 bits (58), Expect = 8.3
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = -3
Query: 438 GEDKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVPAEWFGWLHYKTDLPPHQDPSR 259
G+D + YY+ P +SR ++E SD S+ +++G KT L + P +
Sbjct: 614 GDD--ASAYYKVP---FSRTVYIEQSD---FRVKDSK---DYYGLAPGKTVLLRYAFPIK 662
Query: 258 PHYKWMADHTENLSGTTAQYVPYSTTRPK-VEAWEPKRKDSV*K*IHAKIYLVEHLF 91
D+++N+ A+Y P T+PK V W + V + +I L E LF
Sbjct: 663 CTEVIYGDNSDNIIEIRAEYDPSKATKPKGVLHWVAEPSPGV-NPLKVEIRLFEKLF 718
>03_02_1007 + 13160772-13161311
Length = 179
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 180 GSYCTAHIGRSCQKDFRCGPPSTCSGDDSDPDAEANR 290
GS+ + H S F PP +GDD DP A A R
Sbjct: 126 GSWWSRH-DSSSSSSFLWPPPPNDNGDDEDPAAAAAR 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,276,902
Number of Sequences: 37544
Number of extensions: 419236
Number of successful extensions: 1200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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