Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a21r
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024876-8|AAF60889.1| 187|Caenorhabditis elegans Hypothetical ... 151 4e-37
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 31 0.80
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 30 1.1
Z81510-5|CAB04165.1| 188|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 5.6
AC006833-11|AAU87801.1| 175|Caenorhabditis elegans Enhancer of ... 28 5.6
Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z81533-3|CAB04335.1| 327|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z67884-1|CAA91807.1| 347|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z35598-7|CAA84650.2| 325|Caenorhabditis elegans Hypothetical pr... 27 7.4
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 27 7.4
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 27 7.4
L14745-4|AAA27921.1| 419|Caenorhabditis elegans Hypothetical pr... 27 7.4
L14745-3|AAM15539.1| 450|Caenorhabditis elegans Hypothetical pr... 27 7.4
AY241927-1|AAO85276.1| 330|Caenorhabditis elegans beta-1,3-gala... 27 7.4
AC024746-16|AAF60408.1| 330|Caenorhabditis elegans Squashed vul... 27 7.4
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 27 9.8
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 27 9.8
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 9.8
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 9.8
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 9.8
U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical pr... 27 9.8
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 9.8
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 9.8
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 9.8
J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV) co... 27 9.8
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 27 9.8
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 9.8
AF039718-3|AAB96744.1| 329|Caenorhabditis elegans Hypothetical ... 27 9.8
>AC024876-8|AAF60889.1| 187|Caenorhabditis elegans Hypothetical
protein Y94H6A.8 protein.
Length = 187
Score = 151 bits (366), Expect = 4e-37
Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Frame = -3
Query: 573 KMSLGKFLALDKLSNFFNVIRQNGGIRASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRF 394
+MSL +L +DK+ F ++++ GG++A L K Y D + G LVG D +GN+YYEN +
Sbjct: 41 QMSLKAWLGIDKIQKFGQMVKEIGGVKAVLKKRYLMDATRVGTLVGSDNFGNRYYENNAY 100
Query: 393 FYSRNRWVEYSDKYYLNYDGSQVPAEWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLS- 217
F RNRWVE+ DK +L+YD +QVP EW WLH+ TD P P P W+ +H EN S
Sbjct: 101 FVPRNRWVEFPDKVWLDYDATQVPPEWHSWLHHITDDAPSVKPP-PTQDWVLEHKENTSI 159
Query: 216 GTTAQYVPYSTTRPKVEAWEPKRK 145
+YVPYSTTR K++ W+P K
Sbjct: 160 YADKKYVPYSTTRTKIQGWQPGEK 183
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 30.7 bits (66), Expect = 0.80
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +3
Query: 228 RCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPD---FHHSSSNTCPSTRPICSCCKRN 398
RC S C + SD D+++ A TI+ P+ H S N + +C CCK +
Sbjct: 397 RCHQDSECRVESSDSDSDSLNQDEHAVHTIEENPNTKSSHPKSEN--QRFQDVCQCCK-S 453
Query: 399 VGSHS 413
VG S
Sbjct: 454 VGHKS 458
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 150 VSAPRLPLWVGSYCTAHIGRSCQKDFRCGPPSTCSG-DDSDPDAEANRFCSVANQTIQRE 326
V+ R L + CT +GR KD R + C D DP+ E + + A T +E
Sbjct: 285 VNNRRKALIMAGRCTRCLGRHSFKDCRSAKFNVCMYCKDEDPNVELHNYGLCAKPTPSQE 344
Query: 327 PD 332
P+
Sbjct: 345 PE 346
>Z81510-5|CAB04165.1| 188|Caenorhabditis elegans Hypothetical
protein F21D9.8 protein.
Length = 188
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/50 (30%), Positives = 18/50 (36%)
Frame = +3
Query: 276 AEANRFCSVANQTIQREPDFHHSSSNTCPSTRPICSCCKRNVGSHSICYH 425
AEA C + D+HH CP + CS C N YH
Sbjct: 117 AEALSMCKHCLTVGVTDDDWHHEG---CPKAKDTCSVCANNTNRVGCKYH 163
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +3
Query: 231 CGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPSTRP 374
CG P S DDSD A + SVA T EP SSS++ S+ P
Sbjct: 673 CGLPHISSNDDSDSRFPAFKSSSVAMLT---EPYKSSSSSSSSTSSIP 717
>AC006833-11|AAU87801.1| 175|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform c protein.
Length = 175
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 333 FHHSSSNTCPSTRPI-C-SCCKRNVGSHSICYHICLLQLEHRPLH 461
FH S + + P C SC K SH + H L+H PLH
Sbjct: 34 FHVDSEHIIRGSSPAKCKSCIKWFNSSHRLLLHFHTAHLDHTPLH 78
>Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical
protein W02A2.3 protein.
Length = 397
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +3
Query: 309 QTIQREP-DFHHSSSNTCPSTRPICSCCKRNVGSHSICYHICLLQLEHRPLHRP 467
++ Q++P F S CP +P C+C N + I I Q + P
Sbjct: 163 RSAQQQPLRFSQYPSCPCPQNQPACTCSTNNQQNEQILVSISCCQQQETTTQAP 216
>Z81533-3|CAB04335.1| 327|Caenorhabditis elegans Hypothetical
protein F36G9.5 protein.
Length = 327
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 332 VRFPLNGLVGYTTKPICLRIRIRVVPTTSGW 240
+ FP NG + PI I +RV T GW
Sbjct: 171 IMFPGNGFCSHVAYPIYGSIMLRVTDTMFGW 201
>Z67884-1|CAA91807.1| 347|Caenorhabditis elegans Hypothetical
protein T14G8.2 protein.
Length = 347
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 408 ENPRFFYSRNRWVEYSDKYYLNY--DGSQVPAEWFGWLHYKT 289
+NP + S V ++K+ +N+ D SQ+ + F WL YKT
Sbjct: 32 DNPLLYNSIREHVN-TEKFTVNFYTDQSQLKIKGFTWLFYKT 72
>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
protein D2085.1 protein.
Length = 2198
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 429 KYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVPAEW 313
KYGN+ + P Y+ R S + D +PA+W
Sbjct: 273 KYGNRGHNQPCTHYATGRCYITSQNHGYAVDPDSLPADW 311
>Z35598-7|CAA84650.2| 325|Caenorhabditis elegans Hypothetical
protein F10F2.3 protein.
Length = 325
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 132 FKHCLCVSAPRLPLWVGSYCTAHIGRSCQKDFRCG 236
F C+C A +P W + + G +CQ CG
Sbjct: 203 FGLCVCQLAQTVPAWCNALDGLYPGYTCQDQLWCG 237
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical protein
B0496.3a protein.
Length = 1551
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 297 YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVE 166
Y+T P P ++ A T + G + Y P+ TTRP +
Sbjct: 1114 YRTHRDSDYRPMSPTSRYTAAVTRDDRGKSTSYDPHETTRPSYD 1157
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical protein
B0496.3b protein.
Length = 1592
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 297 YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVE 166
Y+T P P ++ A T + G + Y P+ TTRP +
Sbjct: 1155 YRTHRDSDYRPMSPTSRYTAAVTRDDRGKSTSYDPHETTRPSYD 1198
>L14745-4|AAA27921.1| 419|Caenorhabditis elegans Hypothetical
protein C02F5.6a protein.
Length = 419
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 318 EWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLSGTT 208
E+ WL + PH PHY M ENLSG +
Sbjct: 276 EFSNWLEELSIRFPHYQIDPPHYIGMTRGYENLSGAS 312
>L14745-3|AAM15539.1| 450|Caenorhabditis elegans Hypothetical
protein C02F5.6b protein.
Length = 450
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 318 EWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLSGTT 208
E+ WL + PH PHY M ENLSG +
Sbjct: 276 EFSNWLEELSIRFPHYQIDPPHYIGMTRGYENLSGAS 312
>AY241927-1|AAO85276.1| 330|Caenorhabditis elegans
beta-1,3-galactosyltransferase protein.
Length = 330
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 498 IRASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRF 394
I A L++ YR +DV G +G KY +PRF
Sbjct: 229 INAQLFRHYRNEDVSVGAWIG--GLDVKYVHDPRF 261
>AC024746-16|AAF60408.1| 330|Caenorhabditis elegans Squashed vulva
protein 2 protein.
Length = 330
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 498 IRASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRF 394
I A L++ YR +DV G +G KY +PRF
Sbjct: 229 INAQLFRHYRNEDVSVGAWIG--GLDVKYVHDPRF 261
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 27.1 bits (57), Expect = 9.8
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = +1
Query: 199 ILGGRARKIFGVVRHPLVVGTTRILMRRQIGFVV*PTKPF------SGNLTSIIVQVILV 360
I GG K+F + G RIL R + + K F SG L+S + I V
Sbjct: 931 IFGGADAKLFDIEEDAEQNGVVRILTRAEFDYEAKANKFFFELQASSGQLSSTVPVRIHV 990
Query: 361 RVLDPSVPAVKETWVLI 411
++ + PA+K+ +L+
Sbjct: 991 SDVNDNKPALKDFVILM 1007
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.1 bits (57), Expect = 9.8
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = +1
Query: 199 ILGGRARKIFGVVRHPLVVGTTRILMRRQIGFVV*PTKPF------SGNLTSIIVQVILV 360
I GG K+F + G RIL R + + K F SG L+S + I V
Sbjct: 931 IFGGADAKLFDIEEDAEQNGVVRILTRAEFDYEAKANKFFFELQASSGQLSSTVPVRIHV 990
Query: 361 RVLDPSVPAVKETWVLI 411
++ + PA+K+ +L+
Sbjct: 991 SDVNDNKPALKDFVILM 1007
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/84 (22%), Positives = 27/84 (32%)
Frame = +3
Query: 168 PLWVGSYCTAHIGRSCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSS 347
P + G C I C P +TC D E + C + + R P+ H
Sbjct: 1716 PSFPGRVCLMFINECESGVHDCDPSATCR------DNEQSFTCECPSGFVDRSPNKHARP 1769
Query: 348 SNTCPSTRPICSCCKRNVGSHSIC 419
C C + SH+ C
Sbjct: 1770 GRVCVKLVDECREGRHTCSSHADC 1793
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/84 (22%), Positives = 27/84 (32%)
Frame = +3
Query: 168 PLWVGSYCTAHIGRSCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSS 347
P + G C I C P +TC D E + C + + R P+ H
Sbjct: 2300 PSFPGRVCLMFINECESGVHDCDPSATCR------DNEQSFTCECPSGFVDRSPNKHARP 2353
Query: 348 SNTCPSTRPICSCCKRNVGSHSIC 419
C C + SH+ C
Sbjct: 2354 GRVCVKLVDECREGRHTCSSHADC 2377
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/84 (22%), Positives = 27/84 (32%)
Frame = +3
Query: 168 PLWVGSYCTAHIGRSCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSS 347
P + G C I C P +TC D E + C + + R P+ H
Sbjct: 1716 PSFPGRVCLMFINECESGVHDCDPSATCR------DNEQSFTCECPSGFVDRSPNKHARP 1769
Query: 348 SNTCPSTRPICSCCKRNVGSHSIC 419
C C + SH+ C
Sbjct: 1770 GRVCVKLVDECREGRHTCSSHADC 1793
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/84 (22%), Positives = 27/84 (32%)
Frame = +3
Query: 168 PLWVGSYCTAHIGRSCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSS 347
P + G C I C P +TC D E + C + + R P+ H
Sbjct: 2300 PSFPGRVCLMFINECESGVHDCDPSATCR------DNEQSFTCECPSGFVDRSPNKHARP 2353
Query: 348 SNTCPSTRPICSCCKRNVGSHSIC 419
C C + SH+ C
Sbjct: 2354 GRVCVKLVDECREGRHTCSSHADC 2377
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 210 SCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPS 365
SC +DFR P C+G AN+F S TI + +F S T S
Sbjct: 1688 SCLEDFRATPFIECNGARGSCHYFANKF-SFWLTTIDNDSEFKVPESQTLKS 1738
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 210 SCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPS 365
SC +DFR P C+G AN+F S TI + +F S T S
Sbjct: 1687 SCLEDFRATPFIECNGARGSCHYFANKF-SFWLTTIDNDSEFKVPESQTLKS 1737
>U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical
protein T07H6.4 protein.
Length = 702
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 357 CPSTRPICSCCKRNVGSHSICYH 425
C T IC+ K N+ SH++ YH
Sbjct: 303 CSKTETICTL-KMNINSHTVIYH 324
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 210 SCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPS 365
SC +DFR P C+G AN+F S TI + +F S T S
Sbjct: 1687 SCLEDFRATPFIECNGARGSCHYFANKF-SFWLTTIDNDSEFKVPESQTLKS 1737
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 210 SCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPS 365
SC +DFR P C+G AN+F S TI + +F S T S
Sbjct: 1688 SCLEDFRATPFIECNGARGSCHYFANKF-SFWLTTIDNDSEFKVPESQTLKS 1738
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 210 SCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPS 365
SC +DFR P C+G AN+F S TI + +F S T S
Sbjct: 1724 SCLEDFRATPFIECNGARGSCHYFANKF-SFWLTTIDNDSEFKVPESQTLKS 1774
>J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV)
collagen protein.
Length = 261
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 210 SCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPS 365
SC +DFR P C+G AN+F S TI + +F S T S
Sbjct: 190 SCLEDFRATPFIECNGARGSCHYFANKF-SFWLTTIDNDSEFKVPESQTLKS 240
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.1 bits (57), Expect = 9.8
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = +1
Query: 199 ILGGRARKIFGVVRHPLVVGTTRILMRRQIGFVV*PTKPF------SGNLTSIIVQVILV 360
I GG K+F + G RIL R + + K F SG L+S + I V
Sbjct: 931 IFGGADAKLFDIEEDAEQNGVVRILTRAEFDYEAKANKFFFELQASSGQLSSTVPVRIHV 990
Query: 361 RVLDPSVPAVKETWVLI 411
++ + PA+K+ +L+
Sbjct: 991 SDVNDNKPALKDFVILM 1007
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/84 (22%), Positives = 27/84 (32%)
Frame = +3
Query: 168 PLWVGSYCTAHIGRSCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSS 347
P + G C I C P +TC D E + C + + R P+ H
Sbjct: 2300 PSFPGRVCLMFINECESGVHDCDPSATCR------DNEQSFTCECPSGFVDRSPNKHARP 2353
Query: 348 SNTCPSTRPICSCCKRNVGSHSIC 419
C C + SH+ C
Sbjct: 2354 GRVCVKLVDECREGRHTCSSHADC 2377
>AF039718-3|AAB96744.1| 329|Caenorhabditis elegans Hypothetical
protein T12F5.2 protein.
Length = 329
Score = 27.1 bits (57), Expect = 9.8
Identities = 21/90 (23%), Positives = 31/90 (34%)
Frame = +3
Query: 183 SYCTAHIGRSCQKDFRCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCP 362
S C KD RC S+C S+ R C++ + F + P
Sbjct: 27 SICMEEFDAIVPKDLRCMTCSSCKMSGSETSFHICRECTIQHHEYDIH-TFIDQEPSIHP 85
Query: 363 STRPICSCCKRNVGSHSICYHICLLQLEHR 452
ICS C + H+ +H + L R
Sbjct: 86 DAFTICSTCV--LKDHNTTHHTVIEYLPIR 113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,078,881
Number of Sequences: 27780
Number of extensions: 370861
Number of successful extensions: 1028
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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