Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a21r
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03100.1 68416.m00306 NADH:ubiquinone oxidoreductase family p...    82   3e-16
At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family p...    36   0.020
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    27   7.0  
At4g02790.1 68417.m00379 GTP-binding family protein contains Pfa...    27   7.0  
At3g28730.1 68416.m03587 structure-specific recognition protein ...    27   9.2  

>At3g03100.1 68416.m00306 NADH:ubiquinone oxidoreductase family
           protein contains Pfam PF05071: NADH:ubiquinone
           oxidoreductase 17.2 kD subunit; similar to
           ethylene-regulated ER6 protein (GI:5669654)
           [Lycopersicon esculentum]; identical to Probable
           NADH-ubiquinone oxidoreductase subunit B17.2 (EC
           1.6.5.3) (EC 1.6.99.3) (Complex I-B17.2) (CI-B17.2)
           (Swiss-Prot:Q9M9M9) [Arabidopsis thaliana]
          Length = 159

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 50/132 (37%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
 Frame = -3

Query: 537 LSNFFNVIRQNGGIRASLYKLYRQDDVKD--GVLVGEDKYGNKYYEN-PRFFYSRNRWVE 367
           L  F  +IR+ G +R        Q  + +    LVG DK+GNKYY+      Y R+RWVE
Sbjct: 18  LGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVE 77

Query: 366 YSDKYYLNYDGSQVPAEWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYS 187
           Y+ K    Y+ SQVPAEW GWLH+ TD    +  S    ++  +H EN SG    Y+ +S
Sbjct: 78  YASKD--RYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKENFSGEGDAYIYHS 135

Query: 186 ---TTRPKVEAW 160
              T  P  + W
Sbjct: 136 KGHTLNPGQKNW 147


>At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family
           protein contains Pfam profile PF05071: NADH:ubiquinone
           oxidoreductase 17.2 kD subunit
          Length = 184

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 441 VGEDKYGNKYY---ENPRFFYSRNRWVEYSDKYYLNYDGSQVPAEWFGWLH 298
           +G DK GNKY+   E    F    RWV    K+    D + +P EW  WL+
Sbjct: 18  IGVDKTGNKYFSRMEEIDGFVKEKRWV----KFRREEDPTSIPVEWICWLN 64


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 258 DDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPSTRPICSCCKR 395
           D+ D D + +  C+V ++ +  E   H     + P    +CS CK+
Sbjct: 511 DEQDCDFQLHVQCAVVSEPLVHESHMHPLFLTSEPYEARLCSVCKK 556


>At4g02790.1 68417.m00379 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 372

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 198 VPYSTTRPKVEAWEPKRK 145
           +P STT PK++AW   RK
Sbjct: 128 IPLSTTHPKMDAWLGNRK 145


>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
           high mobility group protein / HMG protein nearly
           identical to SP|Q05153 Structure-specific recognition
           protein 1 homolog (HMG protein) {Arabidopsis thaliana};
           contains Pfam profile PF00505: HMG (high mobility group)
           box; contains Pfam profile PF03531: Structure-specific
           recognition protein
          Length = 646

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 234 GPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPSTR 371
           G P+  SG D D DA       +  ++I++EP    SSS   P  R
Sbjct: 494 GSPTDDSGGD-DSDASEGGVGEIKEKSIKKEPKKEASSSKGLPPKR 538


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,080,198
Number of Sequences: 28952
Number of extensions: 339621
Number of successful extensions: 945
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)