Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a21f
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 29 0.72
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 29 0.72
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi... 26 3.8
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 5.1
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa... 25 6.7
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 6.7
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 8.9
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 8.9
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 25 8.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.9
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 28.7 bits (61), Expect = 0.72
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 192 FYSRNRWVEYSDKYYLNYDGSQVPAEW 272
F + WV Y+D LNYDGS W
Sbjct: 139 FEKKAAWVLYADIICLNYDGSAFDYAW 165
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 28.7 bits (61), Expect = 0.72
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 93 ASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVP-AE 269
+S+ L + VKD + D G+ +N + S N Y +K+ YD +P +
Sbjct: 47 SSMLHLSKGLTVKDVRIFFHDSIGSTLLKNRKKLNSENELPNYGEKFTHKYDNQDMPDSV 106
Query: 270 WFGWLHYKTDLPP 308
W ++ T P
Sbjct: 107 WLAKVNGMTKSDP 119
>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
protease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 298
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 343 WRTTPKIFLARPPNMCRTVRPDPKWKP 423
W+ K F RP ++P P WKP
Sbjct: 11 WKFGQKRFYYRPWIRIENIKPTPLWKP 37
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = +3
Query: 153 DKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVPAE 269
DKY Y YS N W+++ K+ + + P +
Sbjct: 565 DKYNKDIYIGSTVCYSPNEWLDFFSKFQQPREALKFPED 603
>SPACUNK4.17 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 150 EDKYGNKYYENPRFFYSRNRWVEYSDKY 233
E +Y + Y N R FYS + ++EY D +
Sbjct: 90 ETEYASSY-ANTREFYSADEYLEYLDSH 116
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 391 RTVRPDPKWKPGSRNAKTVFKNK 459
R+VR PK+KPG+R + T +N+
Sbjct: 110 RSVRSKPKYKPGTRRS-TRLRNR 131
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 126 VKDGVLVGEDKYGNKYYENPRFFYSRNRWVEYSDKYY 236
V G+++ + +K ENP F+Y R EY D +Y
Sbjct: 357 VSYGLMMNLVRDFSKNLENPNFYYER----EYVDSFY 389
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.0 bits (52), Expect = 8.9
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 222 SDKYYLNYDGSQVPAEWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLSGTTAQ-YVPYS 398
S+ + +N +G +V + W + D H D + + H E L T + Y Y
Sbjct: 302 SNTFVVNNEGKRVRGRRYPWGVVEVDNEEHSDFPKLREMLIRTHLEELKEQTNKLYEAYR 361
Query: 399 TTR 407
T R
Sbjct: 362 TER 364
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 207 RWVEYSDKYYLNYDGSQVPAEWFGWLHYKTD 299
+WV+YS+KY L Y Q+ E G +H+ D
Sbjct: 496 KWVDYSNKYGLGY---QLSDESVG-VHFNDD 522
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 254 TSIIVQVILVRVLDPSVPAVKETWVLIVFVTIFVFSN*NTV 132
TS+ V+++ ++ DP + VK+ W + F TI + NTV
Sbjct: 1530 TSVFVELLRLKDSDPLLSVVKDNW--LFFQTILT-NEINTV 1567
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,959
Number of Sequences: 5004
Number of extensions: 66055
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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