Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a21f
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6553| Best HMM Match : Complex1_17_2kD (HMM E-Value=2.50006e-41)   138   3e-33
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)            31   1.0  
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_11942| Best HMM Match : Ank (HMM E-Value=3.6e-22)                   30   1.3  
SB_37337| Best HMM Match : PGI (HMM E-Value=0)                         29   2.3  
SB_36384| Best HMM Match : Keratin_B2 (HMM E-Value=2.3)                29   2.3  
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_59125| Best HMM Match : DUF1309 (HMM E-Value=4.2)                   29   4.1  
SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_18522| Best HMM Match : DUF960 (HMM E-Value=8.2)                    28   5.4  
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_45724| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_41760| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_6553| Best HMM Match : Complex1_17_2kD (HMM E-Value=2.50006e-41)
          Length = 134

 Score =  138 bits (335), Expect = 3e-33
 Identities = 58/133 (43%), Positives = 85/133 (63%)
 Frame = +3

Query: 39  LDKLSNFFNVIRQNGGIRASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRFFYSRNRWVE 218
           + K+      +++ GG++ + ++  R++  + GV VGEDKYGNKYYEN ++ + RNR+VE
Sbjct: 1   MSKIQQSLKFVKEIGGVKGAFWRFMRENTARIGVFVGEDKYGNKYYENNKYLFGRNRFVE 60

Query: 219 YSDKYYLNYDGSQVPAEWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYS 398
           Y     + Y  +QVP EW  WLH  TD PP + P  P  K+  DH  + +GT  +YVPYS
Sbjct: 61  YPYAGRMEYHATQVPPEWHRWLHNMTDDPPSKVPPVPR-KFFLDHETSKTGTDEKYVPYS 119

Query: 399 TTRPKVEAWEPKR 437
           TTRPK+E+W P +
Sbjct: 120 TTRPKIESWTPPK 132


>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
          Length = 796

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -2

Query: 393 TAHIGRSCQKDFRCGP--PST-CSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNT 229
           T H G S   +  C P  P   C+GDD+D D + +R   V   +  ++  F+ S   T
Sbjct: 122 TKHGGNSKNSEESCKPFDPHRHCNGDDNDSDDDDHRLHHVGEYSCSKKTSFNSSKFKT 179


>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
 Frame = -2

Query: 438 CVSAPRLPLWVGSYCTAHIGRSCQKDFRCGPPS--TCSGDDSDPDAEANRFCS----VAN 277
           CV  P     +   C     + C    +C  P   TCS   + P+      C+     AN
Sbjct: 218 CVCKPGYEQALSGQCVPVCTQGCVNG-KCTSPDVCTCSFGWTGPNCSVECLCNGHGHCAN 276

Query: 276 QTIQRE--PDF-HHSSSNTCPSTRPICSCCKRNVGSHSICYHIC 154
            T +R+   D  +H++ ++C    P+     RN GS   CYH C
Sbjct: 277 AT-KRDVCTDCRNHTTGSSCQYCEPLYVGDARNNGSCVSCYHTC 319


>SB_11942| Best HMM Match : Ank (HMM E-Value=3.6e-22)
          Length = 540

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
 Frame = +3

Query: 141 LVGEDKYGNKYYENPRF------FYSRNRWVEYSDKYYLNYDGSQVPAEWFGWLHYKTDL 302
           LVG D  GNKYYE  R          R +    +   +  Y     P EW  W+  K + 
Sbjct: 17  LVGTDLDGNKYYEIVRSGSHAGDMSQRTKREVVTKLKHDQYTPGTNPIEWESWIRGKREE 76

Query: 303 PP-HQD 317
           PP H++
Sbjct: 77  PPTHEE 82


>SB_37337| Best HMM Match : PGI (HMM E-Value=0)
          Length = 391

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 336 KWMADHTENLSGTTAQYVPYSTTRPKV 416
           KW+ DH ++ S     +V  ST  PKV
Sbjct: 171 KWLLDHLKDKSAVAKHFVALSTNEPKV 197


>SB_36384| Best HMM Match : Keratin_B2 (HMM E-Value=2.3)
          Length = 199

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -2

Query: 477 DKF*REFIFKHCLCVSAPRLPLWVGSYCTAHIGRSCQKDFRCGPPS 340
           DK+ R+ IF+  +   +P +P WVG+ C + + +  ++ +RC  PS
Sbjct: 129 DKWGRK-IFRDTVLSWSPMIPCWVGTPCKS-VVQHIRRKYRCLGPS 172


>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +3

Query: 288 YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEPKRK 440
           YK+  PPH+    PH  +   H        +   P+ + +P  ++++P  K
Sbjct: 423 YKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHK 473



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +3

Query: 288 YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEPKRK 440
           +K+  PPH+    PH  +   H        +   PY + +P  ++++P  K
Sbjct: 444 HKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPYKSYQPPYKSYQPPYK 494



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 288 YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEP 431
           +K+  PPH+    PH  +   H        +   PY + +P  ++++P
Sbjct: 451 HKSYQPPHKSYQPPHKSYQPPHKSYQPPYKSYQPPYKSYQPPYKSYQP 498


>SB_59125| Best HMM Match : DUF1309 (HMM E-Value=4.2)
          Length = 187

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 459 FIFKHCLCVSAPRLPL 412
           F+ KH LC+SAP LPL
Sbjct: 96  FLNKHYLCISAPALPL 111


>SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 150 EDKYGNKYYENPRFFYSRNRWVEYSDKYY 236
           ++KYG++ YE+  + Y +    EY DK Y
Sbjct: 6   DEKYGDEEYEDKEYEYEKYGDEEYEDKKY 34


>SB_18522| Best HMM Match : DUF960 (HMM E-Value=8.2)
          Length = 368

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 150 LQLEHRPLHRPACIVYTTRLLYHRSDELR*KNCLA 46
           L L HR LH P C   T R+LYH        +CLA
Sbjct: 49  LSLIHR-LHPPQCWATTRRMLYHSLFTYSSLHCLA 82


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 294  TDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTR 407
            TD+PP  DPS P  K  + H    S ++A   PY  T+
Sbjct: 2960 TDIPPLLDPSLPSPKLSSSH---FSRSSANSYPYPLTQ 2994


>SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/58 (20%), Positives = 29/58 (50%)
 Frame = +3

Query: 213 VEYSDKYYLNYDGSQVPAEWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLSGTTAQY 386
           + Y+D   +++D +Q   EW   ++   D+  +      +Y+  +D+TE ++    +Y
Sbjct: 245 IRYADHTRIHHDCNQNEDEWTHLIYLNPDMEKNDYGETVYYERNSDNTEIIAEVRPKY 302


>SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 195 YSRNRWVEYSDKYYLNY 245
           Y  ++WV+YSDKY L Y
Sbjct: 428 YWVSKWVDYSDKYGLGY 444


>SB_45724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 108 LYRQDDVKDGVLVGEDKYGNKYYENPRFFYS 200
           L RQ+D+  GVL  E++ GN  Y  P  + S
Sbjct: 276 LKRQEDIGGGVLCSEEQNGNHTYGLPNRYGS 306


>SB_41760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 348 DHTENLSGTTAQYVPYSTTRPKVEAWEPKRKDSV 449
           DH+  ++ +TA  +  ST R +  A   K++DSV
Sbjct: 17  DHSSGITDSTASIIQASTIRKRTTAGLVKKQDSV 50


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 377  RPICAVQYDPTQSGSLGAETQRQ 445
            RPIC++ Y PT++  L + ++RQ
Sbjct: 1557 RPICSLNYSPTKTIHLQSRSKRQ 1579


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,161,327
Number of Sequences: 59808
Number of extensions: 515661
Number of successful extensions: 1472
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)