Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a20r
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)              157   5e-39
SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8)                    30   0.94 
SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)                     29   1.6  
SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)                  29   1.6  
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)                      29   2.9  
SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)                   28   5.0  
SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06)               27   6.6  
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)                 27   8.8  

>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
          Length = 543

 Score =  157 bits (381), Expect = 5e-39
 Identities = 82/114 (71%), Positives = 87/114 (76%), Gaps = 1/114 (0%)
 Frame = -3

Query: 415 LGPQHL-VGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAM 239
           LG +H+  GE VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGGMKVKADRDEASPYAAM
Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAM 246

Query: 238 LAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRI 77
           LAAQDVA +CK +GITALHIKLRA           GAQ          MKIGRI
Sbjct: 247 LAAQDVAARCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 300


>SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8)
          Length = 178

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -3

Query: 448 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 272
           NK+ K    +TLG   +  ET    AH  A  +    HVTD    RE  ++ +   KV A
Sbjct: 65  NKLQKATDTMTLGANAINTETKPVGAHNMAGGHARVQHVTDPGIDREVRSKASAPAKVHA 124

Query: 271 DRDEASPYAAMLAAQDV 221
           +    +P   M AA  V
Sbjct: 125 EGAAPAPSPRMHAAHSV 141


>SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)
          Length = 433

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 448 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 272
           NK+ K    +TLG   +  ET    AH  A  N    HVT+   GRE  ++     KV A
Sbjct: 329 NKLQKATDSMTLGANAISTETKPVGAHNMAGGNPRVQHVTNPRIGREVRSKAFAPAKVYA 388

Query: 271 DRDEASPYAAM 239
           +    +P + M
Sbjct: 389 EGAAPAPSSRM 399


>SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)
          Length = 352

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -3

Query: 448 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 272
           NK+ K    +TLG   +  ET    AH  A  +    HVTD    RE  ++ +   KV A
Sbjct: 239 NKLQKATDTMTLGANAINTETKPVGAHNMAGGHPRVQHVTDPGIDREVRSKASAPAKVHA 298

Query: 271 DRDEASPYAAMLAAQDV 221
           +    +P   M AA  +
Sbjct: 299 EGAAPAPSPRMHAAHSM 315


>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
          Length = 230

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -3

Query: 376 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRD 263
           + +I  +FND    + DLSG+ETI  ++   K++ +RD
Sbjct: 154 IIYIEDTFNDLLRTLRDLSGKETIVLIS--CKIRYERD 189


>SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -3

Query: 448 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 272
           NK+ K    +TLG   +  ET    AH  A  +    HVTD    RE  ++     KV A
Sbjct: 349 NKLQKATDSMTLGANAINTETKPLGAHNMAGGHPRVQHVTDPRIDREVRSKAFAPAKVHA 408

Query: 271 DRDEASPYAAMLAAQDV 221
           +    +P + M AA  +
Sbjct: 409 EGAAPAPSSRMHAAHSM 425


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -3

Query: 448 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKAD 269
           NK+ K    +TLG   +  ET    AH  A  +    HVTD       ++ +   KV A+
Sbjct: 368 NKLQKATNSMTLGANAINTETKPVGAHNMAGGHPRVQHVTDRVPSRRQSKDSAPAKVHAE 427

Query: 268 RDEASPYAAMLAAQ 227
              A+P A  ++ +
Sbjct: 428 GAAAAPAAHSMSGE 441


>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
          Length = 889

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
 Frame = +3

Query: 174 SFMCKAVMPRVLHFSATSCAANIAA*GDASSRSAFTFMPPVTRA--IVSRPDKSVT*TNV 347
           S +  +V P  L  SA SCA        ++S  A T  PP T    +  +P K V     
Sbjct: 373 SSISTSVAPTSLFGSAKSCAPETKTTTSSNSLLAGTQQPPTTTTAPVFGQPGKPVASLGT 432

Query: 348 SL-NEAKMCATPNTVSPTKCWGPRVTWTSS 434
            L  +A+   T  T   T+     V+  SS
Sbjct: 433 GLFGQAETAETSTTAVSTQSISQAVSAPSS 462


>SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06)
          Length = 141

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 316 RETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHI 179
           R   AR+     V A  DEA+    +   QD+  KCK LG+T + I
Sbjct: 63  RLAFARLFYHHPVIAMLDEATSALDVRTEQDLYRKCKQLGMTLISI 108


>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 134  WCSVCTSGSCSFKYEDWPH*RCHPRTIRLDP 42
            W  V +S  C   Y D+P  R +  TI L+P
Sbjct: 1107 WAGVGSSLRCDKAYFDYPRKRVNDTTIHLEP 1137


>SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)
          Length = 595

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 212 FLCYILCRQHSSVG*RFITVSLHLH 286
           ++CYI C+Q+      FIT S H H
Sbjct: 137 WICYIFCKQNDRKTVDFITPSPHSH 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,703,906
Number of Sequences: 59808
Number of extensions: 364037
Number of successful extensions: 856
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)