Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a20r
(504 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A) 202 1e-52
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi... 201 2e-52
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo... 200 3e-52
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 36 0.015
At5g53640.1 68418.m06663 F-box family protein contains F-box dom... 28 3.1
At3g56410.2 68416.m06274 expressed protein 28 4.1
At3g56410.1 68416.m06273 expressed protein 28 4.1
At5g12370.1 68418.m01455 exocyst complex component Sec10-related... 27 7.2
At4g25220.1 68417.m03629 transporter, putative similar to glycer... 27 7.2
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 27 9.5
>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
Length = 150
Score = 202 bits (492), Expect = 1e-52
Identities = 101/148 (68%), Positives = 113/148 (76%)
Frame = -3
Query: 463 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 284
M+ RK K K +V VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 283 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXXX 104
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA GAQ
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119
Query: 103 XXSMKIGRIEDVTPVPSDSTRRKGGRRG 20
MKIGRIEDVTP+P+DSTRRKGGRRG
Sbjct: 120 RSGMKIGRIEDVTPIPTDSTRRKGGRRG 147
>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
to 40S ribosomal protein S14 GB:P19950 [Zea mays]
Length = 150
Score = 201 bits (491), Expect = 2e-52
Identities = 101/148 (68%), Positives = 112/148 (75%)
Frame = -3
Query: 463 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 284
M+ RK K K E VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 283 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXXX 104
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA GAQ
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119
Query: 103 XXSMKIGRIEDVTPVPSDSTRRKGGRRG 20
MKIGRIEDVTP+P+DSTRRKGGRRG
Sbjct: 120 RSGMKIGRIEDVTPIPTDSTRRKGGRRG 147
>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
ribosomal protein S14 -Zea mays,PIR2:A30097
Length = 150
Score = 200 bits (489), Expect = 3e-52
Identities = 100/148 (67%), Positives = 112/148 (75%)
Frame = -3
Query: 463 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 284
M+ RK K K E VTLGP GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 283 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXXX 104
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA GAQ
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALA 119
Query: 103 XXSMKIGRIEDVTPVPSDSTRRKGGRRG 20
MKIGRIEDVTP+P+DSTRRKGGRRG
Sbjct: 120 RSGMKIGRIEDVTPIPTDSTRRKGGRRG 147
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 35.9 bits (79), Expect = 0.015
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = -3
Query: 391 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 212
ET + HI N+TFV VTD G +G + + + Y A A+++ +
Sbjct: 190 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 249
Query: 211 CKTLGITALHIKL 173
K +G+ ++ +K+
Sbjct: 250 AKAMGLKSVVVKV 262
>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
Pfam:PF00646
Length = 917
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 442 LCFFSGPWLSL*LESCQNLKS 504
LC + WL LESC NLKS
Sbjct: 807 LCIYDLKWLPTFLESCPNLKS 827
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -2
Query: 242 YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 84
Y G+ C E +NSW + A + N +P+ W S + +YE W
Sbjct: 1040 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1090
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -2
Query: 242 YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 84
Y G+ C E +NSW + A + N +P+ W S + +YE W
Sbjct: 993 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1043
>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
low similarity to SP|O00471 Exocyst complex component
Sec10 (hSec10) {Homo sapiens}
Length = 858
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 295 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 188
+GG+++K D +E + A V EK + LGI A
Sbjct: 777 SGGLRLKRDLNEYVGFVKSFGAPSVDEKFELLGIIA 812
>At4g25220.1 68417.m03629 transporter, putative similar to
glycerol-3-phosphate transporter (glycerol 3-phosphate
permease) [Homo sapiens] GI:7543982
Length = 504
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 21 PLRPPFLRVESDGTGVTSSMR 83
P+ PP + E DGT + S+MR
Sbjct: 229 PVNPPTVEAERDGTEIDSTMR 249
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 26.6 bits (56), Expect = 9.5
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Frame = -3
Query: 487 SSQAKG*AMAPRKNKVAKEEVQVTLGPQHLVGET----VFGVAHIFASFNDTFVHVTDLS 320
+SQ++G A RK+++ + + + G+ FG F +F D VHV+ LS
Sbjct: 110 TSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLS 169
Query: 319 G---RETIARVTGGMKVKADRDEA 257
++ + VT G +VK EA
Sbjct: 170 DNFVKDVSSVVTIGQEVKVRLVEA 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,362,967
Number of Sequences: 28952
Number of extensions: 237078
Number of successful extensions: 592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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