Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a20f
(551 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0) 157 6e-39
SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8) 30 1.1
SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4) 29 1.9
SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4) 29 1.9
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44) 29 3.3
SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 28 5.8
SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06) 27 7.7
>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
Length = 543
Score = 157 bits (381), Expect = 6e-39
Identities = 81/114 (71%), Positives = 86/114 (75%), Gaps = 1/114 (0%)
Frame = +3
Query: 90 LGPQHL-VGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAM 266
LG +H+ GE VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGGMKVKADRDEASPYAAM
Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAM 246
Query: 267 LAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 428
LAAQDVA +CK +GITALHIKLRA AQ MKIGRI
Sbjct: 247 LAAQDVAARCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 300
>SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8)
Length = 178
Score = 30.3 bits (65), Expect = 1.1
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 57 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 233
NK+ K +TLG + ET AH A + HVTD RE ++ + KV A
Sbjct: 65 NKLQKATDTMTLGANAINTETKPVGAHNMAGGHARVQHVTDPGIDREVRSKASAPAKVHA 124
Query: 234 DRDEASPYAAMLAAQDV 284
+ +P M AA V
Sbjct: 125 EGAAPAPSPRMHAAHSV 141
>SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)
Length = 433
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 57 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 233
NK+ K +TLG + ET AH A N HVT+ GRE ++ KV A
Sbjct: 329 NKLQKATDSMTLGANAISTETKPVGAHNMAGGNPRVQHVTNPRIGREVRSKAFAPAKVYA 388
Query: 234 DRDEASPYAAM 266
+ +P + M
Sbjct: 389 EGAAPAPSSRM 399
>SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)
Length = 352
Score = 29.5 bits (63), Expect = 1.9
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 57 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 233
NK+ K +TLG + ET AH A + HVTD RE ++ + KV A
Sbjct: 239 NKLQKATDTMTLGANAINTETKPVGAHNMAGGHPRVQHVTDPGIDREVRSKASAPAKVHA 298
Query: 234 DRDEASPYAAMLAAQDV 284
+ +P M AA +
Sbjct: 299 EGAAPAPSPRMHAAHSM 315
>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
Length = 230
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 129 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRD 242
+ +I +FND + DLSG+ETI ++ K++ +RD
Sbjct: 154 IIYIEDTFNDLLRTLRDLSGKETIVLIS--CKIRYERD 189
>SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 28.7 bits (61), Expect = 3.3
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 57 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 233
NK+ K +TLG + ET AH A + HVTD RE ++ KV A
Sbjct: 349 NKLQKATDSMTLGANAINTETKPLGAHNMAGGHPRVQHVTDPRIDREVRSKAFAPAKVHA 408
Query: 234 DRDEASPYAAMLAAQDV 284
+ +P + M AA +
Sbjct: 409 EGAAPAPSSRMHAAHSM 425
>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +3
Query: 57 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKAD 236
NK+ K +TLG + ET AH A + HVTD ++ + KV A+
Sbjct: 368 NKLQKATNSMTLGANAINTETKPVGAHNMAGGHPRVQHVTDRVPSRRQSKDSAPAKVHAE 427
Query: 237 RDEASPYAAMLAAQ 278
A+P A ++ +
Sbjct: 428 GAAAAPAAHSMSGE 441
>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
Length = 889
Score = 27.9 bits (59), Expect = 5.8
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Frame = -2
Query: 331 SFMCKAVMPRVLHFSATSCAANIAA*GDASSRSAFTFMPPVTRA--IVSRPDKSVT*TNV 158
S + +V P L SA SCA ++S A T PP T + +P K V
Sbjct: 373 SSISTSVAPTSLFGSAKSCAPETKTTTSSNSLLAGTQQPPTTTTAPVFGQPGKPVASLGT 432
Query: 157 SL-NEAKMCATPNTVSPTKCWGPRVTWTSS 71
L +A+ T T T+ V+ SS
Sbjct: 433 GLFGQAETAETSTTAVSTQSISQAVSAPSS 462
>SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06)
Length = 141
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 189 RETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHI 326
R AR+ V A DEA+ + QD+ KCK LG+T + I
Sbjct: 63 RLAFARLFYHHPVIAMLDEATSALDVRTEQDLYRKCKQLGMTLISI 108
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,630,255
Number of Sequences: 59808
Number of extensions: 384050
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -