Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a19r
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   6.3  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   6.3  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    25   6.3  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   8.3  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 221 VDVHDELHKRRGTGGNSRSNDNR 289
           +D  D + K RG GG   SND R
Sbjct: 394 IDEIDAIGKARGRGGQFGSNDER 416


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/61 (24%), Positives = 24/61 (39%)
 Frame = +2

Query: 134  DNGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSSH 313
            + G  FS+  +   +    SGS RN+SG+            T   S   D+ +  H   H
Sbjct: 1023 ETGRRFSILREAGSLRESMSGSSRNSSGDYTDSMSQDAPNHTTEPSERRDSSTSSHFEEH 1082

Query: 314  Y 316
            +
Sbjct: 1083 F 1083


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 140 GALFSLFGDNNGVGLDFSGSIRNTSGN 220
           GAL  +     G+G D  GSIR+ + N
Sbjct: 212 GALLGIKASVLGIGSDIGGSIRSPAAN 238


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = +2

Query: 158 FGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSR----SNDNRSGLHGSSHYTTV 325
           FG NN       GS  NT GN     +     G G N+      ++   GL G+ + TT 
Sbjct: 17  FGQNNQQTGGLFGSNSNTPGNTLFGSQNTSTTGFGQNTTQPLFGSNTNGGLFGNRNNTTT 76

Query: 326 S 328
           +
Sbjct: 77  T 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,086,614
Number of Sequences: 5004
Number of extensions: 13478
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)