Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a19r
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0792 - 25275013-25275551,25275715-25275907                       29   1.6  
08_02_0464 - 17463066-17465136,17470821-17471650                       28   3.6  
06_03_1153 - 28047125-28047751                                         28   3.6  
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364...    27   6.3  
01_05_0551 + 23169751-23170491                                         27   8.3  

>01_05_0792 - 25275013-25275551,25275715-25275907
          Length = 243

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
 Frame = +2

Query: 164 DNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTTVSDRXXX 343
           D  GVG D    +R         DE  + RG+ G+      + G  G    TT +D    
Sbjct: 75  DWQGVGDDCDYGLRQRGRRSSGCDEEGEVRGSNGSRMEGGGKDGDGGQDLVTTEADPAPW 134

Query: 344 XXXXXXXXXXXXXECRSNGNRF-KDTGRSHGDQGEG 448
                          RS+  R  +   R+HGD G G
Sbjct: 135 RTDLVWGELAAVAALRSSQRRCQRQRRRAHGDGGGG 170


>08_02_0464 - 17463066-17465136,17470821-17471650
          Length = 966

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 188  FSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNR 289
            + G + N  GNVD  D  H     GG ++  DN+
Sbjct: 922  YFGEVMN-DGNVDEEDSAHLTDNNGGKNQDEDNK 954


>06_03_1153 - 28047125-28047751
          Length = 208

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 167 NNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGN 268
           N G GLD S SI    G++  +D+L+   G GGN
Sbjct: 163 NGGGGLDGSSSIGTNGGDIGGNDDLY---GGGGN 193


>04_04_1537 -
           34235360-34235486,34236107-34236234,34236344-34236483,
           34236967-34237023,34237358-34237475,34237585-34237734,
           34237857-34237941,34238040-34238104,34238351-34238500,
           34238835-34238910,34239071-34239150
          Length = 391

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 383 ECRSNGNRFKDTGRSHGDQGEGNEEFHFGFSIV*IQLI 496
           E  ++GN F    R+ GDQ EGNEE H  +  + +Q I
Sbjct: 17  EVSADGNCFF---RAMGDQLEGNEEEHMKYRAMIVQYI 51


>01_05_0551 + 23169751-23170491
          Length = 246

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 239 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVSD 331
           LH   G GG+ R+ D+  G +G     T+SD
Sbjct: 58  LHGGGGGGGDHRTTDDDDGSNGRDQAATLSD 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,529,895
Number of Sequences: 37544
Number of extensions: 101235
Number of successful extensions: 398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)