Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a19r
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical pr...    32   0.20 
Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical pr...    32   0.26 
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    30   0.80 
U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna bi...    28   4.3  
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    27   5.7  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    27   5.7  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    27   5.7  
AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical ...    27   5.7  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      27   5.7  

>Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical
           protein F48F7.4 protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 137 NGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSSH 313
           N +  +L   +NG   + SGS+RN   N +  +   K RG  GN++   N +  H  +H
Sbjct: 535 NSSTSALTPRSNGQKKETSGSVRNEGSNNNSQNRNTKYRGAVGNNQHMYNGNEGHSGAH 593


>Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical
           protein C26D10.1 protein.
          Length = 569

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +2

Query: 194 GSIRNTSGNVDVHDELHK 247
           G++RN++GNVDVH  LHK
Sbjct: 269 GNLRNSNGNVDVHPLLHK 286


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = +2

Query: 134  DNGALFSLFGDNNGVGLDFSGSIR--NTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGS 307
            D GA  S    +N  GL   G+ +  N     DV   LH     G  S  ND  +GL+  
Sbjct: 878  DQGAKISTSSTDNQGGLACYGTTQAANWINLPDVRSALHVSSAAGAWSACNDTINGLYVQ 937

Query: 308  SHYTTVS 328
             H  T S
Sbjct: 938  QHNDTTS 944


>U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 7 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 21/65 (32%), Positives = 26/65 (40%)
 Frame = +2

Query: 128 DRDNGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGS 307
           DRD       F DN G G  F G      G  D  ++     G GG+     +R G  G 
Sbjct: 247 DRDRRESSGGFRDNRGGGGGFGG------GGRDRFNDRSGGGGYGGDRDRGGDRGGDRGG 300

Query: 308 SHYTT 322
           S Y+T
Sbjct: 301 SRYST 305


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 239 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVS 328
           LH+  G  G S S++N +  H + HY  +S
Sbjct: 360 LHQGYGMNGPSCSSENNNPFHQNHHYNDIS 389


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 239 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVS 328
           LH+  G  G S S++N +  H + HY  +S
Sbjct: 456 LHQGYGMNGPSCSSENNNPFHQNHHYNDIS 485


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 239 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVS 328
           LH+  G  G S S++N +  H + HY  +S
Sbjct: 428 LHQGYGMNGPSCSSENNNPFHQNHHYNDIS 457


>AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical
           protein Y41C4A.5 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 128 DRDNGALFSLFGDNN-GVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHG 304
           + +N +  S +G NN G G   S S    SGN + ++  +   G G ++ +N N S  +G
Sbjct: 211 NNNNSSGNSNYGSNNSGSGNGNSNSGNGNSGNGNGNNAGNSGNGNGNSNGNNGNGSNGNG 270

Query: 305 SSH 313
           + +
Sbjct: 271 NGN 273


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 239 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVS 328
           LH+  G  G S S++N +  H + HY  +S
Sbjct: 360 LHQGYGMNGPSCSSENNNPFHQNHHYNDIS 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,192,293
Number of Sequences: 27780
Number of extensions: 81615
Number of successful extensions: 407
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)