Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a19r
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05120.1 68416.m00556 expressed protein low similarity to PrM...    29   1.7  
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden...    27   6.9  
At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pin...    27   6.9  
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    27   6.9  
At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR...    27   9.2  
At3g25070.1 68416.m03132 RPM1-interacting protein 4 (RIN4) ident...    27   9.2  

>At3g05120.1 68416.m00556 expressed protein low similarity to PrMC3
           [Pinus radiata] GI:5487873
          Length = 345

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +2

Query: 131 RDNGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSS 310
           +D+     L GD++G  +  + ++R     +DV   +      GGN R+   +S L G  
Sbjct: 179 KDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVLGNILLNPMFGGNERTESEKS-LDG-K 236

Query: 311 HYTTVSDR 334
           ++ TV DR
Sbjct: 237 YFVTVRDR 244


>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
           identical to nuclear RNA binding protein GI:6492264 from
           [Arabidopsis thaliana]
          Length = 355

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 167 NNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSG 295
           NNG    +SG     SG  DV    ++RRG GG  R +    G
Sbjct: 88  NNG----YSGGYTKPSGEGDVSKSSYERRGGGGAPRGSFRGEG 126


>At3g63010.1 68416.m07078 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 358

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +2

Query: 131 RDNGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSS 310
           +D+     L GD++G  +  + ++R T+  V V   +      GG  R+   ++ L G  
Sbjct: 179 KDSNVYVYLAGDSSGGNIAHNVAVRATNEGVKVLGNILLHPMFGGQERTQSEKT-LDG-K 236

Query: 311 HYTTVSDR 334
           ++ T+ DR
Sbjct: 237 YFVTIQDR 244


>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 424 KPRRSGRRQRGISFWVFNC 480
           KPRR G R  G S++ FNC
Sbjct: 103 KPRRKGSRFGGSSYFHFNC 121


>At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1197

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 212 SGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTTV 325
           +G VD+HD L+      G   +  +R G H   H+ T+
Sbjct: 507 AGKVDMHDTLYMLSKELGREATATDRKGRHRLWHHHTI 544


>At3g25070.1 68416.m03132 RPM1-interacting protein 4 (RIN4)
           identical to SP|Q8GYN5 RPM1-interacting protein 4
           {Arabidopsis thaliana}
          Length = 211

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 230 HDELHKRRGTGGNSRSNDNRSGLHGSSHYTTVSDR 334
           ++  +KR+G    + S DN+S LH +S+  T   R
Sbjct: 96  NEAANKRQGRASQNNSYDNKSPLHKNSYDGTGKSR 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,897,925
Number of Sequences: 28952
Number of extensions: 77092
Number of successful extensions: 248
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)