Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a18r
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    30   1.6  
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    30   1.6  

>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 42  KDLNFLHYNTKHFKQNKTLWDYEC 113
           K  NFL +  K  K+NK ++DY C
Sbjct: 162 KTSNFLQFQFKFLKKNKKMYDYRC 185


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 42  KDLNFLHYNTKHFKQNKTLWDYEC 113
           K  NFL +  K  K+NK ++DY C
Sbjct: 162 KTSNFLQFQFKFLKKNKKMYDYRC 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,310,798
Number of Sequences: 27780
Number of extensions: 278648
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)