Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a18f
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          24   1.0  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   4.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 446 RRWWNLPRYPAK 481
           +RWW+ PR PA+
Sbjct: 43  KRWWSRPREPAQ 54


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 305 DHNIVISWSS*HTCRWIL 252
           DHN  I WS  H C  +L
Sbjct: 33  DHNGSIYWSMYHLCTVVL 50


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 519 TSIQSLLSDPNPNSPANSMAAQLYKE 596
           T+I  L++ P P + ANS A +LY +
Sbjct: 3   TAISCLVA-PFPGASANSEAKRLYDD 27


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 415 NRTVGGLFGYSSVNSIVS 362
           NR +GG+ GY+ + +++S
Sbjct: 415 NRFLGGIGGYNGLPTVMS 432


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 597 SPCKAVRPSNLLESLGWDHL 538
           +P    +PS +++ LGW  L
Sbjct: 370 NPILKAKPSEVVQILGWKEL 389


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 468 DILQNRWSPTYDVSAILTSIQSLLS 542
           ++L+NRW  T D   +  S+  L S
Sbjct: 106 EVLENRWLFTTDWCDVWRSLDVLFS 130


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 398 TPNSTICIKNVSSKCLRR 451
           +PNSTI +     KC RR
Sbjct: 96  SPNSTIAVCVCMRKCPRR 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,007
Number of Sequences: 438
Number of extensions: 3969
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)