Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a17f
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 31 0.60
At1g67650.1 68414.m07720 expressed protein 29 1.8
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 29 2.4
At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsi... 29 2.4
At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit, ... 29 3.2
At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondr... 29 3.2
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 3.2
At1g02570.1 68414.m00208 expressed protein 29 3.2
At5g61580.1 68418.m07727 phosphofructokinase family protein simi... 28 5.6
At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containi... 28 5.6
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 27 7.4
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam... 27 7.4
At3g09030.1 68416.m01059 potassium channel tetramerisation domai... 27 7.4
At1g74800.1 68414.m08666 galactosyltransferase family protein co... 27 7.4
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote... 27 7.4
At5g64950.1 68418.m08170 mitochondrial transcription termination... 27 9.7
At5g45470.1 68418.m05586 expressed protein contains Pfam domain,... 27 9.7
At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit, ... 27 9.7
At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family pr... 27 9.7
At1g15860.1 68414.m01903 expressed protein 27 9.7
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 31.1 bits (67), Expect = 0.60
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = +3
Query: 237 RFREDTPDIKALRE--KEKGD-WRKLTLEEKKTLY 332
+++E+ PD+K++RE K G+ W+ +T EEK Y
Sbjct: 80 QYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYY 114
>At1g67650.1 68414.m07720 expressed protein
Length = 651
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -2
Query: 516 SGAEP--SASLHSMSQE*DCTQRLSWPCRSKQPKMRGLEPNQRLPSTLRWGPGTQRRSDR 343
SGA+P S S+SQE +++ + K PK LE + P RW P +R S R
Sbjct: 535 SGAKPIEGISAASLSQEEVKKEKVKRKRKPKYPKGFDLENSGPTPDPERWLPRRERSSYR 594
Query: 342 MK 337
K
Sbjct: 595 PK 596
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 168 WVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKA 269
W F G Y+ R +F LP+I E TP+ KA
Sbjct: 346 WKIKSFPGNKEYMLRAEFHLPSITAEEATPERKA 379
>At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsis
hypothetical protein PID:e326839 (gb|Z97337) contains
transmembrane domains
Length = 416
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 237 RFREDTPDIKALREKEKGDWRKLTLEEK--KTLYRASFCQTFAEFQAPTGEWKGVVGWAL 410
R TP I LREK + D KLTL + KTL R F + + VGW +
Sbjct: 6 RASSKTPAISGLREKHQQDLEKLTLTSQPFKTL-RLFVVAVFLYVRRWSSYLLANVGWLI 64
Query: 411 VLSSL 425
+ S+
Sbjct: 65 LFCSI 69
>At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit (Ath-A), Arabidopsis thaliana
Length = 1084
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 58 WPII*CAGRSSMLSVFLSAPGLDPLETLNLPRLVTVS 168
WP M+ VFL + G+ +E LPRLV VS
Sbjct: 490 WPGNSVRDHPGMIQVFLGSDGVRDVENNELPRLVYVS 526
>At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondrial
(RPOMT) identical to SP|P92969 DNA-directed RNA
polymerase, mitochondrial precursor (EC 2.7.7.6)
{Arabidopsis thaliana}
Length = 976
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 135 NTELAKIGDREWVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEK 287
N ++ + DR W G G VDR D P+P RED K R + K
Sbjct: 468 NKKVLSLVDRIWANGGRIG--GLVDREDVPIPEEPEREDQEKFKNWRWESK 516
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 231 AIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYR 335
A+ + TP IKA++E+ GD K+ LE + LY+
Sbjct: 666 AMAMKSLTPQIKAIQERYAGDQEKIQLETAR-LYK 699
>At1g02570.1 68414.m00208 expressed protein
Length = 431
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 218 VRPVYVVGLAVETIAYPLTVTNLGKFSVSSGSSP 117
VRP ++ +++ ++ PL+ L + SVSS S+P
Sbjct: 17 VRPFQMISISLLSLLVPLSFLFLSRLSVSSSSAP 50
>At5g61580.1 68418.m07727 phosphofructokinase family protein similar
to phosphofructokinase [Amycolatopsis methanolica]
GI:17432243; contains Pfam profile PF00365:
Phosphofructokinase
Length = 530
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 183 FNGQPNYVDRPDFPLPAIRFREDTPDIKALREK 281
FN N + R DFPLPA++ ++ + + L +K
Sbjct: 18 FNPSSNVLPRRDFPLPALKLKKVSVLPRILHQK 50
>At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat;
similar to ESTs gb|R30192 and gb|AA651017
Length = 913
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -2
Query: 231 QAGGSQACLRSWAGR*NHSLPTHGHQSWQVQCFQWIQPWRRQEHG 97
QA G Q +SW+ + S P+ QSW Q QPW Q G
Sbjct: 701 QAPGYQQ-QQSWSQQSGWSSPSGHQQSWTNQTAGQQQPWANQTPG 744
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 222 GSQACLRSWAGR*NHSLPTHGHQSWQVQCFQW 127
GSQ C +W+ N + THG+ Q+ +++
Sbjct: 384 GSQVCNLAWSKNVNEIVSTHGYSQNQIMLWKY 415
>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
protein
Length = 454
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 155 NLGKFSVSSGSSPGADRNTDSIDERPAHQIIGHFAGRIGLELYENHTHQ 9
+LG S SS +S D D H + GRI +E +E H+H+
Sbjct: 72 HLGSDSPSSSTSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSHR 120
>At3g09030.1 68416.m01059 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 460
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 90 NAIRVPVCARAGSTGNTELAKIGDREWV 173
++I VC+++G G ++ K+G+ WV
Sbjct: 330 DSILFKVCSKSGDLGMADIRKLGEDPWV 357
>At1g74800.1 68414.m08666 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 672
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 246 EDTPDIKALREKEKGDWRKLTLEEKKTLYR 335
ED P I + KGDW K + E+ + YR
Sbjct: 241 EDPPRILHFNPRLKGDWSKKPVIEQNSCYR 270
>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GI:4105699
from [Arabidopsis thaliana]
Length = 996
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 25 SYNSSPILPAKWPII*CAGR-SSMLSVFLSAPGL 123
S+NS+ P +W + CAG SS+ SV LS+ L
Sbjct: 39 SWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANL 72
>At5g64950.1 68418.m08170 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 391
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 544 MGFTLRSNILWS*AFCLSSLNESGIGLYTKTFMA 443
+GFTL S +L LSSL+E K FMA
Sbjct: 226 LGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMA 259
>At5g45470.1 68418.m05586 expressed protein contains Pfam domain,
PF04578: Protein of unknown function, DUF594
Length = 866
Score = 27.1 bits (57), Expect = 9.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 156 QSWQVQCFQWIQPWRR 109
QSWQ +CF W+ +R+
Sbjct: 383 QSWQERCFNWLLKFRK 398
>At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit (Ath-A), Arabidopsis thaliana
Length = 1069
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 58 WPII*CAGRSSMLSVFLSAPGLDPLETLNLPRLVTVS 168
WP M+ VFL G+ +E LPRLV VS
Sbjct: 478 WPGNNVRDHPGMIQVFLGNNGVRDVENNELPRLVYVS 514
>At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 328
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 216 DFPLPAIRFREDTPDIKALREKEKGDWRKLTLEEKK 323
D P +RF ++ IK L EK+KG K+ E +K
Sbjct: 245 DLPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEK 280
>At1g15860.1 68414.m01903 expressed protein
Length = 225
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 279 KEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPT-GEWKGVVGWALVLSSLAAWI 437
K + D++ + +++ LYR FC E P G++ + W L+L + WI
Sbjct: 172 KIQNDYKVINMDQWMGLYR--FCN---EISFPDMGDYNPELAWPLILDNFVEWI 220
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,826,874
Number of Sequences: 28952
Number of extensions: 337286
Number of successful extensions: 915
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -