Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a16r
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39580.1 68415.m04855 expressed protein                             29   2.2  
At4g27190.1 68417.m03905 disease resistance protein (NBS-LRR cla...    29   2.9  
At5g43840.1 68418.m05360 heat shock transcription factor family ...    27   8.9  
At3g54480.2 68416.m06028 SKP1 interacting partner 5 (SKIP5) iden...    27   8.9  
At3g54480.1 68416.m06027 SKP1 interacting partner 5 (SKIP5) iden...    27   8.9  

>At2g39580.1 68415.m04855 expressed protein
          Length = 1567

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 660 VAHEHCTRFYKC-FNSRPVALICPPNLLYNPSNEQCDWPHNVECGDRTIPENVEDED 493
           + +E    FY C     P   +C   L    +N++C W H  +  D ++ +++ D D
Sbjct: 787 IVYEKKIGFYTCNLKVDPSWPLCMYELRGRCNNDECSWQHFKDFSDDSLHQSLHDPD 843


>At4g27190.1 68417.m03905 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 985

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 133 TD*KQFNNLKSIMLHKTIISRKKYVCMCLWNNS*TAVDIL 252
           +D K F NLKS+ +   II+   +V M   N S  + DIL
Sbjct: 766 SDNKGFKNLKSLTIENVIINTNSWVEMVSTNTSKQSSDIL 805


>At5g43840.1 68418.m05360 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 282

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 271 RRMRLASEC---RLRFKNYSINTYIHTFFEKL 185
           RR R+A E    RLR K  S+ TY+H   EKL
Sbjct: 128 RRDRMALEVELVRLRRKQESVKTYLHLMEEKL 159


>At3g54480.2 68416.m06028 SKP1 interacting partner 5 (SKIP5)
           identical to GP:14348816 SKP1-interacting partner 5
           {Arabidopsis thaliana}
          Length = 118

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 471 CHRWHYRCPHPRRFL 515
           CHRW Y   HPR +L
Sbjct: 63  CHRWRYLACHPRLWL 77


>At3g54480.1 68416.m06027 SKP1 interacting partner 5 (SKIP5)
           identical to GP:14348816 SKP1-interacting partner 5
           {Arabidopsis thaliana}
          Length = 274

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 471 CHRWHYRCPHPRRFL 515
           CHRW Y   HPR +L
Sbjct: 63  CHRWRYLACHPRLWL 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,279,618
Number of Sequences: 28952
Number of extensions: 264722
Number of successful extensions: 621
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)