Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a16f
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054...    31   1.0  
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568...    29   5.5  

>01_03_0285 -
           14604499-14604608,14604692-14605203,14605339-14605418,
           14605597-14605699,14605759-14605907,14606088-14606180,
           14606289-14606675,14607690-14608124,14608198-14608311,
           14608405-14608453,14608684-14608843,14608941-14609499
          Length = 916

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 473 AEKDSDGVLVAHEHCTRFYKCFDSHPVALI 562
           +EKD DGV+  H HC+  Y+  D+    ++
Sbjct: 806 SEKDKDGVIELHNHCSSVYQEGDARSALIV 835


>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
            39956998-39957263,39957345-39957420,39957525-39957605,
            39957676-39957831,39958565-39958669,39958761-39959367,
            39959514-39959585,39959802-39959953,39960063-39960240,
            39960642-39960745,39960822-39960953,39961036-39961132,
            39961280-39961407,39961533-39961592,39962799-39962918,
            39963011-39963091,39963173-39963361,39963826-39964024,
            39964177-39964257,39964398-39964588,39965226-39965382,
            39965986-39966119,39966266-39966334,39966434-39966481,
            39966572-39966646,39967112-39967192,39967399-39967461,
            39967564-39967623,39967754-39967795,39968777-39968902,
            39969027-39969176
          Length = 1843

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -1

Query: 730  RVHFQCYRFVSVSSTAIVTFTINILVVFWNDSVSTLYIMRPVALLVIRIIQQIWRTNEG- 554
            R H    ++V   STA+   T   L+    D ++  +I   VA L+ R + +++++  G 
Sbjct: 815  RCHGILLQYVEFLSTAVTPTTYVQLIPPLEDLINKYHIEPDVAFLIYRPVMRLFKSTNGG 874

Query: 553  --YW 548
              YW
Sbjct: 875  DTYW 878


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,585,176
Number of Sequences: 37544
Number of extensions: 320797
Number of successful extensions: 762
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)