Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a15r
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep: Zgc:...    90   2e-17
UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit...    87   2e-16
UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep...    47   3e-04
UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3; Magnoliophyt...    36   0.74 
UniRef50_A6R5C2 Cluster: Predicted protein; n=4; Ascomycota|Rep:...    35   0.98 
UniRef50_Q9WUG7 Cluster: ARL-6 interacting protein-3; n=1; Mus m...    35   1.3  
UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit...    35   1.3  
UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus lu...    34   1.7  
UniRef50_A2EC85 Cluster: Putative uncharacterized protein; n=1; ...    33   4.0  

>UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep:
           Zgc:92922 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 97

 Score = 90.2 bits (214), Expect = 2e-17
 Identities = 48/92 (52%), Positives = 54/92 (58%)
 Frame = -1

Query: 392 SATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDDSX 213
           SAT+VG+ SRSP+K  A PRTA                       AG+GGMWRFYT+DS 
Sbjct: 7   SATNVGASSRSPSKTVA-PRTAGTSARQRKATSSSARSGGRSTASAGTGGMWRFYTEDSP 65

Query: 212 XXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 117
                     VMSLLFIASVFMLHIWGKYTR+
Sbjct: 66  GLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 97


>UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit
           beta; n=31; Eukaryota|Rep: Protein transport protein
           Sec61 subunit beta - Homo sapiens (Human)
          Length = 96

 Score = 87.0 bits (206), Expect = 2e-16
 Identities = 47/94 (50%), Positives = 54/94 (57%)
 Frame = -1

Query: 398 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDD 219
           +PS T+VGS  RSP+KA A    A+G                     AG+GGMWRFYT+D
Sbjct: 5   TPSGTNVGSSGRSPSKAVAA--RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTED 62

Query: 218 SXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 117
           S           VMSLLFIASVFMLHIWGKYTR+
Sbjct: 63  SPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep:
           SJCHGC05179 protein - Schistosoma japonicum (Blood
           fluke)
          Length = 88

 Score = 46.8 bits (106), Expect = 3e-04
 Identities = 33/97 (34%), Positives = 42/97 (43%)
 Frame = -1

Query: 407 MPQSPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFY 228
           MP SPSA+S          A+A PR + G                          ++ FY
Sbjct: 1   MPTSPSASS--------KSATASPRGSGGGARQRKAPAASARRPVAPTAQKNP--VFLFY 50

Query: 227 TDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 117
           ++DS           VMSL FI SVF+LH WGKYTR+
Sbjct: 51  SEDSPGIKVGPVPVLVMSLCFIVSVFLLHFWGKYTRS 87


>UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3;
           Magnoliophyta|Rep: Os01g0565900 protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 80

 Score = 35.5 bits (78), Expect = 0.74
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 254 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTR 120
           G+  M +FYTD++           +MS+ FIA V +LH++GK  R
Sbjct: 33  GASTMLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77


>UniRef50_A6R5C2 Cluster: Predicted protein; n=4; Ascomycota|Rep:
           Predicted protein - Ajellomyces capsulatus NAm1
          Length = 285

 Score = 35.1 bits (77), Expect = 0.98
 Identities = 36/105 (34%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
 Frame = -1

Query: 404 PQSPSATSVG-SGSR-----SPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGG 243
           P+S S  S G SGS      SPT    GPRTA                       AG+GG
Sbjct: 179 PKSASGASSGISGSALHRPSSPTPPG-GPRTAMRRRAAADHKESIRNARPASTRSAGAGG 237

Query: 242 ----MWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTR 120
               M + YTD+S           V+SL FI SV  LH+  K +R
Sbjct: 238 SSGTMLKLYTDESPGLKVDPVVVLVLSLGFIFSVVGLHVIAKISR 282


>UniRef50_Q9WUG7 Cluster: ARL-6 interacting protein-3; n=1; Mus
           musculus|Rep: ARL-6 interacting protein-3 - Mus musculus
           (Mouse)
          Length = 88

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = -1

Query: 392 SATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDDS 216
           S  +VGS  RSP   S G + A G                     AG+GGMWRFY ++S
Sbjct: 6   SGDNVGSSGRSPG-TSVGAQ-AVGSTVRQKRDASCGTESAGRTTSAGTGGMWRFYVENS 62


>UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit
           beta; n=13; Magnoliophyta|Rep: Protein transport protein
           Sec61 subunit beta - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 82

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 251 SGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGK 129
           +G M +FYTDD+           +MS+ FIA V +LH+ GK
Sbjct: 37  AGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 77


>UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus
           lucimarinus CCE9901|Rep: Predicted protein -
           Ostreococcus lucimarinus CCE9901
          Length = 76

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -1

Query: 254 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGK 129
           GSG + RFYTD+S            MS+ FI  V MLH   K
Sbjct: 25  GSGSLLRFYTDESPGLKITPVVVLGMSVCFIGFVTMLHAIAK 66


>UniRef50_A2EC85 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 848

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 357 G*STPRSYRGSTRRLRHFYSNVVKLYFKSDIH 452
           G S P  Y+  TR   H+Y ++ K+YF  DIH
Sbjct: 442 GESYPNRYKPGTRHDDHYYVSIDKIYFFPDIH 473


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,759,045
Number of Sequences: 1657284
Number of extensions: 7569284
Number of successful extensions: 14643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14638
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)