Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a14r
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 40 4e-04
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 38 0.002
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 34 0.018
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 33 0.041
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 30 0.29
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.88
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 28 1.5
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 2.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.0
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 4.7
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 4.7
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 6.2
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 6.2
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 8.2
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = -1
Query: 685 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
E IAS + +MPTFVF +NGK++D +GAN
Sbjct: 62 EQRQIASGLGVKAMPTFVFFENGKQIDMLTGAN 94
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = -1
Query: 685 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
+ +IA+E +++MP+F KNG+K++E GAN
Sbjct: 59 QLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 34.3 bits (75), Expect = 0.018
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 676 DIASEYNINSMPTFVFVKNGKKLDEFSG 593
D+ SEY+I PT KNGK++ ++SG
Sbjct: 85 DLCSEYSIRGYPTLNVFKNGKQISQYSG 112
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.1 bits (72), Expect = 0.041
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 676 DIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
DIA +++N++P FV + K L SGAN
Sbjct: 64 DIAESFDVNAVPLFVLIHGAKVLARISGAN 93
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 676 DIASEYNINSMPTFVFVKNGKKLDEFSGANV 584
DIA + + ++PT V + G++LD GA+V
Sbjct: 79 DIAQKNGVYALPTMVLFRKGQELDRIVGADV 109
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 0.88
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 430 KFITDVKNIFYSFIKNVYMFFFFNSILVSI 519
KFI D +N F+ I Y F F ++L+ +
Sbjct: 436 KFILDSQNFFFESINTEYSFIIFTNLLMHL 465
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 425 SSNSLQTLKTFFIHLLKTYTCFFFLIP 505
SS +L +F+ L++ + CFFF+ P
Sbjct: 50 SSGPFISLSFWFLSLVRGFVCFFFMFP 76
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 406 QTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGC 528
++ + N ++TD +NIF +F+ N + F + L I C
Sbjct: 71 KSSESNSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 198 IGEIIHLSKPDKNKNKNITIHTLKFLSNHL 287
+G I HL K D+N K ++TL F+ N L
Sbjct: 1251 LGFIHHLKKKDQNMEKVPVLYTLDFIWNTL 1280
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 385 FFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSI 519
+F +++T K FI KNIF F +FF F IL SI
Sbjct: 84 WFPRNKIRTAKYTPIDFIP--KNIFLQFQNVANLFFLFLVILQSI 126
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 162 KHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTL 266
K DG+ S GE++H + ++ KN+ + I+ L
Sbjct: 301 KLDGSFMEVKRSAGEVVHPGETERVKNQGMPIYNL 335
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +1
Query: 367 ITTEPIFFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGCVQL*SL 546
+ T+ I+F + T + + + +++ F S ++N+ FF S G C+ L
Sbjct: 22 VITQLIYFLTSKKITN-LGKIRLVKSIRDSFLSQLENILCFFLVYRTTYSFGVCLMKRFL 80
Query: 547 F 549
F
Sbjct: 81 F 81
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 150 KSF*KH---DGNLSYTLISIGEIIHLSKPDKNKNKNITIHTLKFLSNHLVKKTKI 305
KSF KH D L ++ S+ ++ KP KN N + HTL + L++ +K+
Sbjct: 223 KSFQKHKRLDEQLLNSVKSMKKVSQQLKPQKNTNDSNNDHTL-LSQDQLIELSKL 276
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 416 KLISSNSLQTLKTFFIHLLKTY 481
KL+SSN+LQ + F+ ++K +
Sbjct: 412 KLVSSNTLQAMSHFYATMIKLF 433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,025
Number of Sequences: 5004
Number of extensions: 57336
Number of successful extensions: 181
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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