Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a14r
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106589-2|AAC78230.1|  107|Caenorhabditis elegans Hypothetical ...    48   5e-06
Z81552-7|CAB04487.2|  606|Caenorhabditis elegans Hypothetical pr...    41   8e-04
AL117201-5|CAB57916.1|  606|Caenorhabditis elegans Hypothetical ...    41   8e-04
AF250925-1|AAF74721.1|  542|Caenorhabditis elegans PNGase protein.     41   8e-04
U23168-7|AAC38808.1|  115|Caenorhabditis elegans Hypothetical pr...    40   0.001
U23168-6|AAP86623.1|  114|Caenorhabditis elegans Hypothetical pr...    40   0.001
DQ241300-1|ABB45864.1|  114|Caenorhabditis elegans TRX-1b protein.     40   0.001
DQ241299-1|ABB45863.1|  115|Caenorhabditis elegans TRX-1a protein.     40   0.001
AF143900-1|AAF66677.1|  284|Caenorhabditis elegans thioredoxin-l...    36   0.029
AF143405-1|AAF66636.1|  284|Caenorhabditis elegans thioredoxin-l...    36   0.029
AC024810-17|AAF60759.1|  284|Caenorhabditis elegans Hypothetical...    36   0.029
AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical ...    36   0.038
Z71178-7|CAA94881.1|  119|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z72511-4|CAA96660.1|  395|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF125951-5|AAL27238.1|  345|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF125951-4|AAT68898.1|  342|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine re...    28   7.7  
AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF106589-2|AAC78230.1|  107|Caenorhabditis elegans Hypothetical
           protein Y44E3A.3 protein.
          Length = 107

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = -1

Query: 685 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
           EC+ +  EY INSMPTF+ + +G K D+FSGAN
Sbjct: 62  ECDGVGEEYEINSMPTFLLIVDGIKKDQFSGAN 94


>Z81552-7|CAB04487.2|  606|Caenorhabditis elegans Hypothetical
           protein F56G4.5 protein.
          Length = 606

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = -1

Query: 676 DIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
           DI   YNI++MPTF+F+KN +++D   GAN
Sbjct: 66  DIVQRYNISAMPTFIFLKNRQQVDMVRGAN 95


>AL117201-5|CAB57916.1|  606|Caenorhabditis elegans Hypothetical
           protein F56G4.5 protein.
          Length = 606

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = -1

Query: 676 DIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
           DI   YNI++MPTF+F+KN +++D   GAN
Sbjct: 66  DIVQRYNISAMPTFIFLKNRQQVDMVRGAN 95


>AF250925-1|AAF74721.1|  542|Caenorhabditis elegans PNGase protein.
          Length = 542

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = -1

Query: 676 DIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
           DI   YNI++MPTF+F+KN +++D   GAN
Sbjct: 2   DIVQRYNISAMPTFIFLKNRQQVDMVRGAN 31


>U23168-7|AAC38808.1|  115|Caenorhabditis elegans Hypothetical
           protein B0228.5a protein.
          Length = 115

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 685 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 581
           E ED+ S+Y++  MPTF+F KNG  ++   G   D
Sbjct: 68  EAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVED 102


>U23168-6|AAP86623.1|  114|Caenorhabditis elegans Hypothetical
           protein B0228.5b protein.
          Length = 114

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 685 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 581
           E ED+ S+Y++  MPTF+F KNG  ++   G   D
Sbjct: 67  EAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVED 101


>DQ241300-1|ABB45864.1|  114|Caenorhabditis elegans TRX-1b protein.
          Length = 114

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 685 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 581
           E ED+ S+Y++  MPTF+F KNG  ++   G   D
Sbjct: 67  EAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVED 101


>DQ241299-1|ABB45863.1|  115|Caenorhabditis elegans TRX-1a protein.
          Length = 115

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 685 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 581
           E ED+ S+Y++  MPTF+F KNG  ++   G   D
Sbjct: 68  EAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVED 102


>AF143900-1|AAF66677.1|  284|Caenorhabditis elegans thioredoxin-like
           protein protein.
          Length = 284

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -1

Query: 682 CEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
           CE  +SE  +NSMPTF+  ++G ++++  GA+
Sbjct: 63  CEKTSSENGVNSMPTFMVFQSGVRVEQMKGAD 94


>AF143405-1|AAF66636.1|  284|Caenorhabditis elegans thioredoxin-like
           protein TXL protein.
          Length = 284

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -1

Query: 682 CEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
           CE  +SE  +NSMPTF+  ++G ++++  GA+
Sbjct: 63  CEKTSSENGVNSMPTFMVFQSGVRVEQMKGAD 94


>AC024810-17|AAF60759.1|  284|Caenorhabditis elegans Hypothetical
           protein Y54E10A.3 protein.
          Length = 284

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -1

Query: 682 CEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
           CE  +SE  +NSMPTF+  ++G ++++  GA+
Sbjct: 63  CEKTSSENGVNSMPTFMVFQSGVRVEQMKGAD 94


>AC024827-2|AAF60805.2|  254|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.2 protein.
          Length = 254

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 685 ECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 587
           EC   A+ Y +N+MPTF+   NG+K     GA+
Sbjct: 62  ECRGTAATYGVNAMPTFIAFVNGQKKATIQGAD 94


>Z71178-7|CAA94881.1|  119|Caenorhabditis elegans Hypothetical
           protein B0024.9 protein.
          Length = 119

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 676 DIASEYNINSMPTFVFVKNGKKLDEFSG 593
           ++A +Y I+++PT    KNG+K+  FSG
Sbjct: 75  ELAMDYGISAVPTVFAFKNGEKISGFSG 102


>Z72511-4|CAA96660.1|  395|Caenorhabditis elegans Hypothetical
           protein F55A11.7 protein.
          Length = 395

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/75 (30%), Positives = 34/75 (45%)
 Frame = -3

Query: 311 YFYFGFFYQVVAKEL*CMNCYVFIFIFVRLTQMYNLTNTNQCVR*VSIVLLKTFVSNKYH 132
           YF +G F     +      CYVF+F FV LT M+ +      +   ++      +S    
Sbjct: 215 YFKYGSFVDFCRRYYIQHLCYVFLFAFV-LT-MFGIAFHGSLIFHETVEFATIVLSVL-- 270

Query: 131 NVFFFYVMQVEACFF 87
             FFF+V+ V AC F
Sbjct: 271 -AFFFFVLFVGACIF 284


>AF125951-5|AAL27238.1|  345|Caenorhabditis elegans Hypothetical
           protein D2063.3a protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 673 IASEYNINSMPTFVFVKNGKKLDEFSG 593
           I+  + I + PT VF  NGK++D   G
Sbjct: 65  ISLNFKITAAPTLVFFSNGKEVDRIDG 91


>AF125951-4|AAT68898.1|  342|Caenorhabditis elegans Hypothetical
           protein D2063.3b protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 673 IASEYNINSMPTFVFVKNGKKLDEFSG 593
           I+  + I + PT VF  NGK++D   G
Sbjct: 65  ISLNFKITAAPTLVFFSNGKEVDRIDG 91


>AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein3 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = -2

Query: 453 VFNVCNEFEDINFLCL---QP-LECKKYWFCC 370
           VFNV   F +INFLCL   +P L  K Y+  C
Sbjct: 19  VFNVLGLFGNINFLCLTYIKPALRSKSYYIQC 50


>AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical
           protein Y76B12C.1 protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 394 FQRLQTQKINIFKFITD-VKNIFYSFIKNVYMFFFFNSILVSIG 522
           FQ+ QT    I   +TD  + ++Y ++     FF++ + ++SIG
Sbjct: 198 FQQRQTGFTQIKDILTDKCRKLYYFYVTENSTFFYYWTAIISIG 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,326,588
Number of Sequences: 27780
Number of extensions: 315785
Number of successful extensions: 831
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)