Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a13r
         (780 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   0.13 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.90 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.90 
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   4.8  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   6.3  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    22   6.3  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    22   6.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   6.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -1

Query: 450 GLDPAGPLWNTNSNRLNAR-DGVYV--EAIHTDGSTTGLGI 337
           G  P G LWN N+ RL  + D  Y   E I  +G  +GL I
Sbjct: 822 GEKPIGILWNINNKRLEPKGDNRYTIREEILANGVLSGLSI 862


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 183 ACCCTGYRPDDFWSRLKQIVPKHDCGCKGSMYNQAESFHRS 305
           A C   Y P D++ +L  IVP+ +   + ++    + F RS
Sbjct: 316 APCPRNYNPADYFIQLLAIVPEKEESSRQAVNLICDKFERS 356


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 183 ACCCTGYRPDDFWSRLKQIVPKHDCGCKGSMYNQAESFHRS 305
           A C   Y P D++ +L  IVP+ +   + ++    + F RS
Sbjct: 316 APCPRNYNPADYFIQLLAIVPEKEESSRQAVNLICDKFERS 356


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 281 PG*EFPPFGKKSALATADPMPRPVVLPS 364
           P  EFP     SAL + DP  R   L S
Sbjct: 215 PPAEFPTTSSSSALESPDPASRSSCLGS 242


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 13  LLFTISIPTRVKFTIFYSLEGISP 84
           LL T+++   V  T++Y    +SP
Sbjct: 213 LLVTLTVLPNVNSTVYYDPRALSP 236


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 717 INPTIRDAYLGKSDVNVIVL 658
           ++  ++DA +GKS V+ IVL
Sbjct: 145 VDKVLQDAKIGKSAVHEIVL 164


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 717 INPTIRDAYLGKSDVNVIVL 658
           ++  ++DA +GKS V+ IVL
Sbjct: 145 VDKVLQDAKIGKSAVHEIVL 164


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 448 FGPGRSSMEHQF*SP 404
           +GP R+S +H F SP
Sbjct: 34  YGPLRTSYQHHFNSP 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,768
Number of Sequences: 336
Number of extensions: 4649
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)