Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a13r
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    28   1.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   5.3  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    26   5.3  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    26   7.0  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   7.0  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   7.0  

>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = -1

Query: 711 PTIRDAYLGKSDVNVIVLDWRRLALSDYA-----TAARGVPAVGRGLGQFLTFL 565
           PT   + L  SD N +++ W R  +   A     T  R V  VG GLG   TFL
Sbjct: 150 PTEDSSSLLDSDANAVMMSWERKIMHRSAEIIAPTKGRRVLNVGFGLGIIDTFL 203


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
 Frame = +2

Query: 440  GSKPVTRATRPPSSRPALPTKCAPRLKPTRCMVLNGAP--VTLLRNVKNCPKPRPTAGTP 613
            GS    +A  PP    ALP    P   PT  +   G P   T +      P P P  G  
Sbjct: 1873 GSDLSNQAAPPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKE 1932

Query: 614  LA 619
             A
Sbjct: 1933 TA 1934


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
 Frame = -1

Query: 570 FLNRVTGAPFNTMHLVGFSLGAHLVGNAGRELGGRVARVTGLDPAGPLWNTNSNRLN--A 397
           FL+ V     N M+   +S      GN+ +  G  V++   +D A  L+  N N L   A
Sbjct: 429 FLSMVESEAKNLMNKTNYSANQSQNGNS-QNSGNPVSQA--IDLAKSLFQ-NRNLLTKLA 484

Query: 396 RDGVYVEAIHTDGSTTGLG-----------IGSAVANADFFPNGGNSQPGCTLSLCNHNR 250
           + GV   A    GS+ GL            +GS+  N++   N  N+    + +  N + 
Sbjct: 485 QSGVLTNA--AQGSSGGLSAAAVSGLIGSFMGSSSNNSNSSNNNSNTSNNNSNTSNNESM 542

Query: 249 AWELFASTVTRNHLVGNQCSNMLQVSSNSCRGNRLNMGNDD 127
             +L + +   +  +G+  +N    +SNS   N  N GN++
Sbjct: 543 VSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNN 583


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 316 RFLPERWKLSAWLYIEP 266
           RF+PERW+   W+ + P
Sbjct: 106 RFIPERWRPPIWVRVLP 122


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 195 CSNMLQVSSNSCRGNRLNMGNDDLRKSGSGLF 100
           CS + + + +  R  ++NM  D +    SGLF
Sbjct: 129 CSYLFRTALSELRSEKINMRKDQISSLRSGLF 160


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 41  ELNSRYSIA*KGYLRPVFTLKSPDPLFLKSSFPMLRRFPRHEFE---DTCSMLLHW 199
           EL+   S+A KG L P       DP F    FP +       FE   D+ S+ L+W
Sbjct: 77  ELSDISSLAEKGELEPPMAKLLSDPDFQGKQFPTVEAPELFIFELAPDSPSIALNW 132


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 426 WNTNSNRLNARDGVYVEAIHTDGSTTGLGIG 334
           W T  N +NA  G  +  +  +G  TG+G G
Sbjct: 720 WITTRNFINATQGKAMLTLFGEGDPTGIGEG 750


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,825
Number of Sequences: 5004
Number of extensions: 76760
Number of successful extensions: 223
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)