Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a13r
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 31 1.0
10_08_0920 - 21580057-21580926 31 1.4
07_01_0159 - 1116786-1117153,1117251-1119936 30 1.8
07_01_0287 - 2094333-2094542,2094719-2095999 30 2.4
02_02_0475 - 10746593-10748104 30 2.4
07_01_0292 - 2117212-2117326,2117402-2117527,2117654-2117791,211... 29 3.1
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533... 29 3.1
04_04_0673 - 27168305-27168874,27168977-27169099,27169180-271694... 29 4.1
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609... 29 4.1
03_05_1002 - 29594462-29594581,29594686-29594781,29594857-295949... 29 4.1
02_05_0584 - 30135768-30135790,30136104-30136866 29 4.1
01_01_0046 - 331758-332627 29 4.1
08_02_0096 - 12296913-12296951,12297205-12297282,12297335-122973... 29 5.5
02_04_0086 + 19610899-19610992,19613399-19613652,19613744-196139... 29 5.5
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 24 7.1
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250... 28 7.2
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 28 7.2
09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829... 28 9.6
09_02_0082 - 4060018-4061604 28 9.6
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 28 9.6
04_04_1129 - 31107892-31110246 28 9.6
04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787 28 9.6
03_01_0640 - 4683970-4684481,4685197-4685343,4685606-4686764,468... 28 9.6
02_05_0916 - 32706039-32706332,32707483-32708103,32708450-327090... 28 9.6
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 378 EAIHTDGSTTGLGIGSAVANA 316
EAI TDGS+T G GS+V NA
Sbjct: 346 EAIGTDGSSTSCGTGSSVTNA 366
>10_08_0920 - 21580057-21580926
Length = 289
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 565 KERQELSQTATDSGHS-SSCSSIVRQSKSSPVQNNYV 672
KE QE S +++ S S SSCSS V + SSP + N V
Sbjct: 5 KELQETSSSSSSSAASTSSCSSAVTDAWSSPARPNAV 41
>07_01_0159 - 1116786-1117153,1117251-1119936
Length = 1017
Score = 30.3 bits (65), Expect = 1.8
Identities = 44/160 (27%), Positives = 61/160 (38%), Gaps = 5/160 (3%)
Frame = -1
Query: 597 GRGLGQFLTFLNRVTGAPFNTMHLVGFSLGAHLVGNAGRELGGRVARVTGLDPAGP-LWN 421
G L L F +T PF M ++ HL G R RV LD G L
Sbjct: 36 GTDLASLLDFKRAITNDPFGAMS--SWNTNTHLCRWKGVTCDQRAHRVVALDLVGQTLTG 93
Query: 420 TNSNRLNARDGVYVEAIHTDGSTTGLGIGSAVANAD---FFPNGGNSQPGCTL-SLCNHN 253
S+ L Y+ ++ + + + N F GNS G +L N
Sbjct: 94 QISHSLGNMS--YLTSLSLPDNLLSGRVPPQLGNLRKLVFLDLSGNSLQGIIPEALINCT 151
Query: 252 RAWELFASTVTRNHLVGNQCSNMLQVSSNSCRGNRLNMGN 133
R L V+RNHLVG+ N+ +S + R RL+ N
Sbjct: 152 RLRTL---DVSRNHLVGDITPNIALLS--NLRNMRLHSNN 186
>07_01_0287 - 2094333-2094542,2094719-2095999
Length = 496
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +2
Query: 299 PFGKKSALATADPMPRPV-VLPSVWIAST*TPSLALRRLELVFHRGPAGSKPVTRATR-- 469
P G+ + AT+ P P+PV V PS+ + S P + + F G T ATR
Sbjct: 60 PVGRDAGGATSSP-PQPVHVTPSILVGSIHAPVFQGELVGMKFGVGSGSMGAGTSATRRL 118
Query: 470 PPSSRPALPT 499
P + ALPT
Sbjct: 119 PATGFGALPT 128
>02_02_0475 - 10746593-10748104
Length = 503
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 541 ERSSCYSIKERQELSQTATDSGHSSSCSSIVRQSKSSPVQNNYVHVRFAE 690
E+S CY + E+Q+LS S C + Q + S + Y V + E
Sbjct: 343 EQSQCYILPEQQQLSDQEYAYSEQSQCYILPEQQELSNQEAEYAFVCYDE 392
>07_01_0292 -
2117212-2117326,2117402-2117527,2117654-2117791,
2117904-2118323,2118421-2118591,2118701-2118880,
2118988-2119140,2119226-2119384,2119841-2120152,
2120285-2120452,2120851-2121050,2122207-2122589,
2123244-2123625
Length = 968
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +1
Query: 448 TGNTSYPSTELTASIAN*MRAQTETN*MHGVERSSCYSIKERQELSQTATDSGHSSSCSS 627
T N+S PS L S + A T + ++ S K++ + + D +SS+CSS
Sbjct: 669 TSNSS-PSMNLPLSESIDAEAAVNTTTANSKKKPSRSRSKKQTDENLAVCDVNNSSNCSS 727
Query: 628 IVRQSKSSPVQNNYVHVRFAEVSIS 702
R+ K S N V + + SIS
Sbjct: 728 GARKRKRSITDKNQVVQKKMKGSIS 752
>04_03_0857 +
20352331-20352582,20352740-20352951,20353047-20353308,
20353418-20353726
Length = 344
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 531 HLVGFSLGAHLVGNAGRELGGRVARVTGLDPAGPLW 424
+L+GFS+G ++ + + + R+A V L P G W
Sbjct: 134 YLMGFSMGGEIMWSCLKHISHRLAGVAILGPVGNYW 169
>04_04_0673 -
27168305-27168874,27168977-27169099,27169180-27169440,
27169723-27169970,27170403-27170483,27171530-27171902
Length = 551
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 100 EESGSALSQVVISHVETVSAARVRRHLQHVAALVTDQMISGH 225
EES S+ + + V+AA RR + H+AAL + S H
Sbjct: 492 EESSSSPAAAAVEDDVAVAAAAARRRMLHLAALGENASASAH 533
>04_03_0858 +
20357519-20357573,20358072-20358119,20360675-20360922,
20361152-20361363,20361480-20361741,20361832-20362143
Length = 378
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 531 HLVGFSLGAHLVGNAGRELGGRVARVTGLDPAGPLW 424
+L+GFS+G ++ + + + R+A V L P G W
Sbjct: 167 YLMGFSMGGEIMWSCLKHISHRLAGVAILAPVGNYW 202
>03_05_1002 -
29594462-29594581,29594686-29594781,29594857-29594916,
29595574-29595618,29595956-29596070,29596200-29596246,
29596529-29596822
Length = 258
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +2
Query: 443 SKPVTRATRPPSSRPALPTKCAPRLKPTR-CMVLNG---APVTLLRNVKNCPKPRPTAGT 610
S PV R + PPS+RPA + + R C L G AP + P P AG+
Sbjct: 9 SLPVPRVSLPPSARPAAAPRHGLLIPGRRGCFRLRGSPAAPAAAASGSPSVPSSSPEAGS 68
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 138 PC*DGFRGTSSKTPAACCCTGYR 206
PC D T+ TP A CC G+R
Sbjct: 181 PCADYLTNTAVPTPPATCCDGFR 203
>01_01_0046 - 331758-332627
Length = 289
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +2
Query: 434 PAGSKPVTRATRPPSSR---PALP-TKCAPRLKPTRCMVLNGAPVTLLRNVKNCPKPRP 598
P S R PPSSR P +P + AP L PT + P R+ ++ P P+P
Sbjct: 30 PPPSSSRYRPPSPPSSRHPHPTIPAARAAPPLGPTNRRLHQQPPPPASRDGRHEPPPKP 88
>08_02_0096 -
12296913-12296951,12297205-12297282,12297335-12297345,
12298140-12299044,12299074-12299243
Length = 400
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 780 FNANNPTXVIAHGWLSNQNTDINPTIRDAY 691
F N +I + W +N + I+P IRD Y
Sbjct: 220 FTLRNENAIIKYNWAANCLSKIDPPIRDVY 249
>02_04_0086 +
19610899-19610992,19613399-19613652,19613744-19613955,
19614059-19614320,19614432-19614728
Length = 372
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 531 HLVGFSLGAHLVGNAGRELGGRVARVTGLDPAGPLW 424
+L+G+S+G ++ + + + R+A V+ L P G W
Sbjct: 166 YLIGYSMGGEIMWSCLKNIPHRLAGVSILGPVGNYW 201
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 24.2 bits (50), Expect(2) = 7.1
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 458 RATRPPSSRPALPTKCAPRLKPTRCMVLNGAPVTLLRNVKNCPKPRPTA 604
RA R P P + P PT + G P + + PKPRP+A
Sbjct: 220 RAPRKPL--PPIAAHVPPFPAPTSTAIAMGKPKQQVLSRFFSPKPRPSA 266
Score = 22.2 bits (45), Expect(2) = 7.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 584 PKPRPTAGTPLAAV 625
P PRP A P+AAV
Sbjct: 275 PPPRPPAEPPVAAV 288
>09_01_0175 -
2509014-2509064,2509389-2509490,2509603-2509729,
2509852-2511564,2512335-2512424,2512533-2512801,
2513118-2513687,2513703-2514065
Length = 1094
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 586 QTATDSGHSSSCSSIVRQSKSSPVQNNYVH-VRFAEVSISDGRI 714
Q A C+++++ S +P++ NY++ +R E I D I
Sbjct: 720 QGAPTDNEEEECTTLIKASHFTPIETNYLNQIRRLESDIEDASI 763
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 452 VTRATRPPSSRPALPTKCAPRLKP 523
V A RPP + PA PT APR P
Sbjct: 159 VAIAPRPPPAEPAEPTAIAPRPPP 182
>09_04_0659 +
19282366-19282584,19282668-19282759,19282868-19282958,
19283393-19283512,19283638-19283730,19283795-19283933,
19284060-19284141,19284229-19284361,19285024-19286010
Length = 651
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -1
Query: 630 YATAARGVPAVGRGLGQFLTFLNRVTGAPFNTMHLVGFSLGAHLVGNAGRE 478
Y PA G G + TGA T+H+V + GA L G AG E
Sbjct: 536 YENTCTAAPAAAGGGGNGSSPAAAYTGALGGTIHVVAGTGGARLRGYAGGE 586
>09_02_0082 - 4060018-4061604
Length = 528
Score = 27.9 bits (59), Expect = 9.6
Identities = 33/102 (32%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Frame = +2
Query: 341 PRPVVLPSVWIAST*TPSLALRRLELVFHRGPAGSKPVT-RATRPPSS-RPALPTKCAPR 514
P PV V + T +P+ A F G A S T RA P + R P C PR
Sbjct: 113 PEPVPSVPVPLGLTMSPTTA----HYSFSYGGASSSSATPRAPIAPLALRAPAPHLCVPR 168
Query: 515 -LKPTRCMVLNGAPVTLLRNVKNCPKPRPTAGTPLAAVA*SD 637
L P P L +V P P P TPLA +D
Sbjct: 169 VLSPPA-----PTPPVLATHVPTPPAPAPPVPTPLAPAPPAD 205
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +2
Query: 437 AGSKPV-TRATRPPSSRPALPTKCAPRLKPTRCMVLNGAPVTLLRNVKNCPKPRPTAGT 610
A S+PV R++ P +RP+ PTK P N + + RP+ T
Sbjct: 128 AASRPVPARSSTPVKTRPSTPTKTRPSTPVRTRQTANSTSDSAAARTTSAQNSRPSTPT 186
>04_04_1129 - 31107892-31110246
Length = 784
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 545 GAPVTLLRNVKNCPKPRPTAGTPLAAVA*SDRASLLQSKTITFTSDLPR*ASLMVGLMSV 724
GA T+L P PRP A LAA+A R+ S ++ P A L++ S+
Sbjct: 69 GADATILSGSSAHPLPRPAAAARLAALALRFRSGPSLSAALSALPSQPDPALLLLAASSL 128
>04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787
Length = 345
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 408 RLNARDGVYVEAIHTDGSTTGLGIGSAV 325
R+++ DG YV+A + TG G+G V
Sbjct: 60 RMSSHDGSYVDAFVVGEAITGYGVGKVV 87
>03_01_0640 -
4683970-4684481,4685197-4685343,4685606-4686764,
4686851-4686907
Length = 624
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 243 ELFASTVTRNHLVGNQCSNMLQVSSNSCRGN--RLNMGNDDLRKSGSGL 103
+L + +T +G +N + + + GN + N+G+D LRKS SGL
Sbjct: 488 DLSFNKITTTKALGQLVANYSSLRALNLVGNPVQTNIGDDALRKSASGL 536
>02_05_0916 -
32706039-32706332,32707483-32708103,32708450-32709070,
32709183-32709752,32709840-32709918,32710002-32710075,
32711336-32711398
Length = 773
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 228 TVTRNHLVGNQCSNMLQVSSNSC---RGNRLNMGNDDLRKSG 112
TVT ++ CS+ L+V SC RG R+ GN L + G
Sbjct: 696 TVTGSNTSATTCSSYLRVPGCSCNCKRGKRVRRGNRRLGEKG 737
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,020,300
Number of Sequences: 37544
Number of extensions: 586456
Number of successful extensions: 2064
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2061
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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