Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a13r
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.79 
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   7.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   7.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -1

Query: 450 GLDPAGPLWNTNSNRLNAR-DGVYV--EAIHTDGSTTGLGI 337
           G  P G LWN N+ RL+ + D  Y   E I  +G  + L I
Sbjct: 802 GEKPIGILWNMNNKRLDPKSDSRYTIREEILANGVLSDLSI 842


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 343 WHRICCRQRRFLPERW 296
           W ++C   RR L E W
Sbjct: 53  WSKVCIVVRRKLEENW 68


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 595 TDSGHSSSCS-SIVRQSKSSPVQNN 666
           +DSG+S++CS S  ++S  S +  N
Sbjct: 13  SDSGYSNTCSNSQSQRSSGSSISRN 37


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 595 TDSGHSSSCS-SIVRQSKSSPVQNN 666
           +DSG+S++CS S  ++S  S +  N
Sbjct: 13  SDSGYSNTCSNSQSQRSSGSSISRN 37


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 252 DCGCKGSMYNQ 284
           DCGC  +M N+
Sbjct: 304 DCGCNSTMLNE 314


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 252 DCGCKGSMYNQ 284
           DCGC  +M N+
Sbjct: 304 DCGCNSTMLNE 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,267
Number of Sequences: 438
Number of extensions: 6123
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)