Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a13f
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    34   0.015
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    31   0.14 
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    30   0.24 
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    28   1.3  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   5.2  
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    25   6.9  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    25   9.1  

>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +2

Query: 143 MPDGDGNLHTVDLEATPDYELLDEINRNPANNQYLLFTRRNRRSSQTLTINNANSVTRSN 322
           +P  D  +H + L    D E L+EIN N    ++L+   +       + +  + ++T +N
Sbjct: 415 VPSDDDFMHALSLSTNSDGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTLNN 474

Query: 323 FNANNPT 343
           F     T
Sbjct: 475 FQQRKLT 481


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = -2

Query: 438 ITFTSDLPR*ASLMVGLMSVFWLLSQP*AITTVGLLALKLDLVTELALLIVNVWEE 271
           +TF   L   +S++  L++V  LLS    I    LL L   L+ E  L+I+NVW E
Sbjct: 90  LTFPQKLKLTSSILFFLVAVGVLLSGDATI----LLTLSCSLIVEGVLIIINVWRE 141


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 22/98 (22%)
 Frame = +2

Query: 215 INRNPANNQYLLFTRRNR-----RSSQTLTINNANSVTRSNFNA----------NNPTVV 349
           IN+ P +N  +L   R+R     R S ++   +A+S+T S+F+           N+PT+V
Sbjct: 404 INQRPPSNLRILAPSRSRATIHERPSSSILHRHAHSLTSSSFSTKTLATTKEIQNSPTLV 463

Query: 350 ----IAH---GWLSNQNTDINPTIRDAYLGKSDVNVIV 442
               + H    +L NQ ++IN T   ++    D+N ++
Sbjct: 464 ESSTVVHHDPSYLQNQTSEINDTNHSSHSSPLDLNRMI 501


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +2

Query: 392 PTIRDAYLGKSDVNVIVLDWRRLALSDYA-----TAARGVPAVGRGLGQFLTFL 538
           PT   + L  SD N +++ W R  +   A     T  R V  VG GLG   TFL
Sbjct: 150 PTEDSSSLLDSDANAVMMSWERKIMHRSAEIIAPTKGRRVLNVGFGLGIIDTFL 203


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
 Frame = +2

Query: 83  AAVPVQEDSFRKGNYPRYIEMPDGDGNLHTVDL--------EATPDYELLDEINRNPANN 238
           A +P        G YP  + +P G  N H               P   +  +    P NN
Sbjct: 136 AGIPAAMPGMPSG-YPGTVPIPQGGYNAHYSSPYNNGYPIGAVNPTSAIPAQPPAQPVNN 194

Query: 239 QYLLFTRRNRRSSQTLTINNA-NSVTRSNFNANNP 340
               + R N RSS   T  +A  S  RS  ++ NP
Sbjct: 195 VLPSYVRSNSRSSARSTARSAPRSTQRSRSSSANP 229


>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 299 ANSVTRSNFNANNPTVVIAHGWLSN 373
           AN+V   + N N+PT   +  W +N
Sbjct: 2   ANNVDTRSANTNSPTTTTSFSWFTN 26


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 490 SSCSSIVRQSKSSPVQNNYVHVRF 419
           S CS + RQS +S +  NY H+ F
Sbjct: 164 SLCSELARQSVNSVISGNY-HIPF 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,518
Number of Sequences: 5004
Number of extensions: 55552
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)