Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a13f
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516... 31 0.76
10_08_0920 - 21580057-21580926 31 1.0
02_02_0475 - 10746593-10748104 30 1.8
08_02_0096 - 12296913-12296951,12297205-12297282,12297335-122973... 29 3.1
01_06_0161 + 27108920-27109279,27109479-27109598,27110301-271104... 29 4.1
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250... 28 5.4
09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829... 28 7.1
08_02_1282 - 25852113-25852406,25852495-25852668,25852849-258529... 28 7.1
04_04_1129 - 31107892-31110246 28 7.1
02_05_1285 - 35452249-35452604,35452702-35452789,35452908-354535... 28 7.1
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 23 9.0
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 27 9.4
01_01_0046 - 331758-332627 27 9.4
>07_01_0684 -
5161218-5161427,5161509-5161616,5162217-5162390,
5162515-5162643,5162722-5163009,5163114-5163346,
5164235-5165060
Length = 655
Score = 31.1 bits (67), Expect = 0.76
Identities = 20/74 (27%), Positives = 29/74 (39%)
Frame = -1
Query: 469 RQSKSSPVQNNYVHVRFAEVSISDGRIDVSILVAEPAMSNNNSWVVGVEVGSCYGVSIVD 290
R+S P+ + V DG IL P + + S +E+ SCY +
Sbjct: 201 RKSGQEPLMVSQFMVELVGTKAVDGEAPPRILHFNPRIRGDYSGKPVIEMNSCYRMQWGQ 260
Query: 289 SQRLGGTTIAPGEE 248
SQR G P +E
Sbjct: 261 SQRCEGYASRPADE 274
>10_08_0920 - 21580057-21580926
Length = 289
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 538 KERQELSQTATDSGHS-SSCSSIVRQSKSSPVQNNYV 431
KE QE S +++ S S SSCSS V + SSP + N V
Sbjct: 5 KELQETSSSSSSSAASTSSCSSAVTDAWSSPARPNAV 41
>02_02_0475 - 10746593-10748104
Length = 503
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 562 ERSSCYSIKERQELSQTATDSGHSSSCSSIVRQSKSSPVQNNYVHVRFAE 413
E+S CY + E+Q+LS S C + Q + S + Y V + E
Sbjct: 343 EQSQCYILPEQQQLSDQEYAYSEQSQCYILPEQQELSNQEAEYAFVCYDE 392
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 562 ERSSCYSIKERQELSQTATDSGHSSSCSSIVRQSKSSPVQNNY 434
E+S CY + E+Q+LS S C + Q + S + Y
Sbjct: 321 EQSQCYIVPEQQQLSNQEYAYSEQSQCYILPEQQQLSDQEYAY 363
>08_02_0096 -
12296913-12296951,12297205-12297282,12297335-12297345,
12298140-12299044,12299074-12299243
Length = 400
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 323 FNANNPTVVIAHGWLSNQNTDINPTIRDAY 412
F N +I + W +N + I+P IRD Y
Sbjct: 220 FTLRNENAIIKYNWAANCLSKIDPPIRDVY 249
>01_06_0161 +
27108920-27109279,27109479-27109598,27110301-27110438,
27110680-27110784,27110883-27111051,27111507-27111583,
27111796-27111840,27111984-27112022,27112374-27112457,
27112846-27112884,27112963-27113025,27113109-27113238,
27113319-27113374
Length = 474
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 86 AVPVQEDSFRKGNYPRYIEMPDGDGNLHTVDLEATPDYELLDEINRNPANNQY 244
AV V E +F KG E+ DG G + TV TP+++ +IN N Y
Sbjct: 403 AVLVGEKTFGKGLIQSVFELHDGSGIVVTVGKYVTPNHK---DINGNGIEPDY 452
>09_01_0175 -
2509014-2509064,2509389-2509490,2509603-2509729,
2509852-2511564,2512335-2512424,2512533-2512801,
2513118-2513687,2513703-2514065
Length = 1094
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 517 QTATDSGHSSSCSSIVRQSKSSPVQNNYVH-VRFAEVSISDGRI 389
Q A C+++++ S +P++ NY++ +R E I D I
Sbjct: 720 QGAPTDNEEEECTTLIKASHFTPIETNYLNQIRRLESDIEDASI 763
>09_04_0659 +
19282366-19282584,19282668-19282759,19282868-19282958,
19283393-19283512,19283638-19283730,19283795-19283933,
19284060-19284141,19284229-19284361,19285024-19286010
Length = 651
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +2
Query: 473 YATAARGVPAVGRGLGQFLTFLNRVTGAPFNTMHLVGFSLGAHLVGNAGRE 625
Y PA G G + TGA T+H+V + GA L G AG E
Sbjct: 536 YENTCTAAPAAAGGGGNGSSPAAAYTGALGGTIHVVAGTGGARLRGYAGGE 586
>08_02_1282 -
25852113-25852406,25852495-25852668,25852849-25852940,
25853465-25853587,25853691-25853721,25854295-25854434,
25854871-25854932,25855027-25855103,25855766-25855868,
25856146-25856207,25857213-25857374
Length = 439
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 254 TRRNRRSSQTLTINNANSVTRSNFNANNPTVVIAHGWLSNQNTDINPTIRDAYLG 418
T+ N Q +N N+V +N +++NP + + S +N + NP Y+G
Sbjct: 227 TKNNAEEKQET--DNHNAVVLTNGSSSNPGMEASQDTGSKENPENNPDCTTVYVG 279
>04_04_1129 - 31107892-31110246
Length = 784
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -2
Query: 558 GAPVTLLRNVKNCPKPRPTAGTPLAAVA*SDRASLLQSKTITFTSDLPR*ASLMVGLMSV 379
GA T+L P PRP A LAA+A R+ S ++ P A L++ S+
Sbjct: 69 GADATILSGSSAHPLPRPAAAARLAALALRFRSGPSLSAALSALPSQPDPALLLLAASSL 128
>02_05_1285 -
35452249-35452604,35452702-35452789,35452908-35453588,
35453639-35453749,35454012-35454047
Length = 423
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 74 YLAAAVPVQEDSFRKGN--YPRYIEMPDGDGNLHTVDLEATPDYELL 208
YL +V EDS + +PR +E+ D H VDL++ P+ + L
Sbjct: 171 YLCMSVCDSEDSVLQLQLEHPRLVELDIYDAGFHLVDLKSLPNLKRL 217
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = -2
Query: 633 PPSSRPALPTKCAPRLKPTRCMVLNGAPVTLLRNVKNCPKPRPTA 499
P P + P PT + G P + + PKPRP+A
Sbjct: 222 PRKPLPPIAAHVPPFPAPTSTAIAMGKPKQQVLSRFFSPKPRPSA 266
Score = 22.2 bits (45), Expect(2) = 9.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 519 PKPRPTAGTPLAAV 478
P PRP A P+AAV
Sbjct: 275 PPPRPPAEPPVAAV 288
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -2
Query: 633 PPSSRPALPTKCAPRLKPTRCMVLNGAP---VTLLRNVKNCPKPRPTAGT 493
PP P LP P L P LNGAP V++ ++ C P T +
Sbjct: 437 PPPPPPPLPPNMPPPLPPPPEPELNGAPAEDVSMEEDMDICDTPPHTTSS 486
>01_01_0046 - 331758-332627
Length = 289
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -2
Query: 633 PPSSR---PALPT-KCAPRLKPTRCMVLNGAPVTLLRNVKNCPKPRP 505
PPSSR P +P + AP L PT + P R+ ++ P P+P
Sbjct: 42 PPSSRHPHPTIPAARAAPPLGPTNRRLHQQPPPPASRDGRHEPPPKP 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,864,069
Number of Sequences: 37544
Number of extensions: 385243
Number of successful extensions: 1131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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