Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a13f
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.038
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   3.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 29.1 bits (62), Expect = 0.038
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +2

Query: 122 NYPRYIEMPDGDGNLHTVDLEATPDYELLDEINRNPANNQYLLFTRRNRRSSQTLTINNA 301
           +Y RY E  + + N +    E   D++  DE          +L T +   ++ T+T  NA
Sbjct: 175 HYDRYKE-EESNENYNWEHKETHIDWQPEDEECTEATAGAVVLETCQRNSNNSTITAGNA 233

Query: 302 NSVTRSNFNANN 337
           N+   +N N NN
Sbjct: 234 NTNASNNNNNNN 245


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 326 NANNPTVVIAHGWLSNQNTDINPTI 400
           N  +PTV     WL   N+ INP I
Sbjct: 37  NCIHPTVFSVLFWLGYCNSAINPCI 61


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 326 NANNPTVVIAHGWLSNQNTDINPTI 400
           N  +PTV     WL   N+ INP I
Sbjct: 485 NCIHPTVFSVLFWLGYCNSAINPCI 509


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 140 EMPDGDGNLHTVDLEATPDYELLDEIN 220
           E+ D DG L    ++  P Y   ++IN
Sbjct: 301 ELEDFDGRLFEFPIKFVPSYPFEEDIN 327


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 67  DGLSGCSRARPRGFIS*RKLPSLH 138
           DG   CSR R R +   R+   LH
Sbjct: 248 DGERSCSRDRSREYKKDRRYDQLH 271


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 508 TDSGHSSSCS-SIVRQSKSSPVQNN 437
           +DSG+S++CS S  ++S  S +  N
Sbjct: 13  SDSGYSNTCSNSQSQRSSGSSISRN 37


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 508 TDSGHSSSCS-SIVRQSKSSPVQNN 437
           +DSG+S++CS S  ++S  S +  N
Sbjct: 13  SDSGYSNTCSNSQSQRSSGSSISRN 37


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 194 DYELLDEINRNPANNQYLLFTRRNRRSSQTLTINNANSVTRSNFNANNPTV 346
           D+   DE    P N  Y  ++R+  R   T T++    V +      +P+V
Sbjct: 312 DHVDFDEFLPPPPNLDYHDYSRQFPRDLTTQTVSTTADVLQEEEEEYSPSV 362


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 341 TVVIAHGWLSNQNTDINPTI 400
           T  I   WL   N+ +NP I
Sbjct: 657 TAFIVTSWLGYMNSFVNPVI 676


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 193 RCSFKIYCV 167
           RC+FK YC+
Sbjct: 142 RCNFKAYCL 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,968
Number of Sequences: 438
Number of extensions: 4081
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)