Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a10f
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.6  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   6.1  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   8.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 484 FCKFSIVVRTSKGVGNSVSPYPEQSTTKLLESPSVWHT 371
           +C FS+    S    N V P+PE+S   +  +P +W++
Sbjct: 313 YCAFSLYPLKSTFYLNVVRPFPERS---MGITPMIWNS 347


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 114 SATTGRGV*ASWSLTNAITDATCRLSSGV 28
           SAT+G G   + SLT  +  A C   S V
Sbjct: 122 SATSGGGANLTNSLTGPVRPAACTPDSRV 150


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 166 GIGVSSDFIPASQVTSVISNN 104
           G+G  S ++ A +VT V  NN
Sbjct: 128 GVGFYSAYLVADKVTVVSKNN 148


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 179 ICFNWNRRFVGFYPSFTSD*CDQ 111
           IC + N  F+G YP+ T    D+
Sbjct: 52  ICTHINYAFLGVYPNGTLQMIDE 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,857
Number of Sequences: 336
Number of extensions: 2240
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)