Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a10f
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0234 + 19282196-19282818,19282948-19283347                       31   0.54 
07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448     31   0.94 
01_02_0050 + 10649275-10649655,10649807-10649921,10651003-106510...    28   5.0  
04_04_1072 - 30587344-30588034,30589866-30590035,30590682-30590879     28   6.6  
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    28   6.6  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    27   8.7  

>05_04_0234 + 19282196-19282818,19282948-19283347
          Length = 340

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = +3

Query: 285 APLLEDVQLTANAEGTATQSGDSTCPKPCVCHTE----GDSSNFVVD-----CSGYGLTE 437
           A L   +   A AE    Q+G + CP  C+C +     G +S+F  D     CSG G T 
Sbjct: 20  AVLAAALATAARAEQCGAQAGGARCPN-CLCCSRWGWCGTTSDFCGDGCQSQCSGCGPTP 78

Query: 438 FPTP 449
            PTP
Sbjct: 79  TPTP 82


>07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448
          Length = 333

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 460 RTSKGVGNSVSPYPEQSTTKLLESPSVWHTHGFGHV-ESPD 341
           R+S G   S SP+    TTK LE    W  +G  H+ +SP+
Sbjct: 100 RSSSGRRRSKSPFVRMVTTKELEDGRQWRKYGQKHIQDSPN 140


>01_02_0050 +
           10649275-10649655,10649807-10649921,10651003-10651009,
           10651035-10651216,10651318-10651530,10651621-10651688,
           10651772-10651846,10651961-10652068,10652413-10652530,
           10652652-10652793,10653084-10653140,10653281-10653701,
           10654064-10654528
          Length = 783

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 577 KSKPMIEFLLAFKTFKFLREATSFGIPVSLLF 482
           +SKP+I+FLL + T     + T    P   LF
Sbjct: 563 RSKPLIDFLLTYTTSSAPMDGTESAAPAQFLF 594


>04_04_1072 - 30587344-30588034,30589866-30590035,30590682-30590879
          Length = 352

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 378 HTEGDSSNFVVDCSGYGLTEFP--TPLDVRTTILNLQNNKLTGIPKDV 515
           H E  +    +D SG  +   P  T    + TIL+L NN L  IP+ +
Sbjct: 25  HEEKKNEEHKLDMSGMSMDALPHLTMSLGQVTILDLSNNNLESIPESI 72


>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +3

Query: 309 LTANAEGTATQSGDSTCPKPCVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNN 488
           +T + +GT   +G+     PC  H   + S     C    L +F    DV    L ++N+
Sbjct: 418 MTLSGKGTIEGNGEEWWNLPCKPHRGPNGSTLPGPCESPALIKFVASSDVSVQGLRMENS 477


>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
            27353739-27354606,27354784-27355957
          Length = 1790

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 318  NAEGTATQSGDSTC-PKPCVCHTEGDSSNFVVDCSGYGLTEFP 443
            + EG    S D+ C P+ C CH E +     +    Y L+  P
Sbjct: 1703 SGEGHCVCSSDNGCVPRECTCHLESNEDAGTIKDESYYLSGQP 1745


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,084
Number of Sequences: 37544
Number of extensions: 256275
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)