Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a10f
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10) 40 0.001
SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06) 39 0.004
SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06) 38 0.006
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 36 0.034
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37) 31 0.72
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32) 28 5.1
SB_25208| Best HMM Match : PAN (HMM E-Value=0.019) 28 5.1
SB_34117| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_19634| Best HMM Match : LRR_1 (HMM E-Value=2.6e-17) 27 8.9
>SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10)
Length = 212
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +3
Query: 357 CPKPCVCHTE---GD-SSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLT 497
CP C C E G+ S+ +V+C+G L FP PL RT+ L L +N+L+
Sbjct: 74 CPAKCECSREKIAGELSTGILVNCTGRRLRNFPLPLPPRTSTLLLNDNRLS 124
>SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06)
Length = 150
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +3
Query: 333 ATQSGDSTCPKP----CVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTG 500
A + CP+P C C G +N V C GL EFP + + TT L+L NKL
Sbjct: 5 AATGAHAPCPRPAVGTCTCVQTGSYTN--VKC--LGLDEFPLDVPINTTSLDLSENKLVS 60
Query: 501 IP 506
P
Sbjct: 61 FP 62
>SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06)
Length = 298
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 357 CPKPCVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGIP 506
CP+ C C+T S + +C G LT FP +D T L L N+L +P
Sbjct: 5 CPQKCSCYTR---SWLITNCRGKYLTSFPDQVDNTTVELILTYNRLKALP 51
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 357 CPKPCVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGIP 506
CP+ C C +VDCS GL P + +NL+ N + +P
Sbjct: 484 CPRECTCAVREIDQTVLVDCSERGLHRLPFKMPAGELEVNLRGNAIRELP 533
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +3
Query: 291 LLEDVQLTANAEGTATQSGDSTCPKPCVCHTEGDSS---NFVVDCSGYGLTEFPTPLDVR 461
LL +Q + S TCP C C+ E ++ D S GL P ++
Sbjct: 10 LLSTLQCVRLGQANVISSVPITCPAYCSCYGEHRVDIYCGYLADDSFSGLRHVPRNFPMQ 69
Query: 462 TTILNLQNNKLTGI 503
++L+L NN ++ I
Sbjct: 70 VSLLSLYNNLISTI 83
>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
Length = 1655
Score = 31.1 bits (67), Expect = 0.72
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 369 CVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGIPKD 512
CV T G S + + +T FP+ L +TI++L N L +P D
Sbjct: 799 CVPITHGSKSLVLTASHHHTITTFPSSLPQTSTIIDLSENLLKVLPPD 846
>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
Length = 1206
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 357 CPKPCVC-HTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGI 503
CP C C +T G ++ G LT P + + T L +N++T +
Sbjct: 960 CPSSCSCVYTSGSGPRRIL-VKGQELTAIPKTMPLDTFALMFSSNRITNV 1008
>SB_25208| Best HMM Match : PAN (HMM E-Value=0.019)
Length = 245
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 469 IVVRTSKGVGNSVSPYPEQSTTKLLESP 386
++++T G+ SVS Y E T KLLE P
Sbjct: 11 LLIQTITGISASVSQYFETHTDKLLEVP 38
>SB_34117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 379 WHTHGFGHVESPDCVAVPSALAVN 308
W THG GH+ S V L VN
Sbjct: 93 WRTHGTGHIRSTTVTQVLKILMVN 116
>SB_19634| Best HMM Match : LRR_1 (HMM E-Value=2.6e-17)
Length = 267
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 465 TILNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGL--DLGSVSELPGL 605
T+L+L +N LT IP+D+ I GL +G++S L L
Sbjct: 130 TVLDLHDNLLTSIPEDIIILRDLERLDLTNNDISGLPYKIGNMSNLKSL 178
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,205
Number of Sequences: 59808
Number of extensions: 291074
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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