Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a09f
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   6.5  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   8.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 172 VRYEITLTRYMAKSLVGAYHRHRKRHLGMRVR 77
           V Y   L      +L+ +YH+ +  H G R R
Sbjct: 774 VDYTKPLVDAQTMNLLRSYHQQQSHHYGRRER 805


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 332 PLESQ*CRSCYRRRH 376
           P E   CR  +RRRH
Sbjct: 246 PFECDKCRGRFRRRH 260


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 633 QVREANTHSTGNGKTIDESASHEYGQD 553
           Q  ++ +HS  N  + ++ +S ++G D
Sbjct: 246 QTHKSPSHSVDNSNSSEKKSSIQHGDD 272


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 502 ILIQPYGPLYQPSNPRNMN 446
           I   PYGP  QP++    N
Sbjct: 73  IQFMPYGPQQQPASVARRN 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,464
Number of Sequences: 336
Number of extensions: 3589
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)