Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a08r
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.4  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 571 LPLDIVIQAVVSLFAVMWGVL 509
           LPL   + A++ LF + WG L
Sbjct: 216 LPLGCPVNAIMGLFVLWWGWL 236


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 463 NAIKWETQNNLPSFYIFNH 407
           N IK   QNN+P++ + NH
Sbjct: 342 NWIKGTPQNNVPNWVMGNH 360


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 4   NCPTTCKSTLHSNQLKP 54
           NCP  CK  L  +Q  P
Sbjct: 346 NCPLHCKPELGQSQSSP 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,445
Number of Sequences: 438
Number of extensions: 4237
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)