Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a08f
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0802 + 23313763-23313835,23314100-23314152,23314651-233147...    64   6e-11
04_01_0196 + 2287911-2288278,2289187-2289838                           31   0.97 
12_01_0715 - 6230393-6231559,6233234-6234553                           27   9.0  

>12_02_0802 +
           23313763-23313835,23314100-23314152,23314651-23314751,
           23315970-23316063
          Length = 106

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 35/96 (36%), Positives = 55/96 (57%)
 Frame = +2

Query: 185 VIVIIGFLSLFHTAFSATQHRSYLRITSQEFTTLPLDIVIQAVVSLFAVMWGVLNVAGNL 364
           V+ ++G   L H A++  Q+R+ L+IT +EF++ P+D+++Q ++ L   MW  L V    
Sbjct: 6   VLGVLGGALLAHAAYATIQYRAVLKITEEEFSSPPMDVMMQLLLGLALCMWAGLAVPAKF 65

Query: 365 REIPAAAELNAIKWETQNNLPSFYIFNHRGKALSYD 472
             +   +E N I      NL  F IFNHRG+AL  D
Sbjct: 66  LSVLPHSEENRIV-SLPANL-DFMIFNHRGRALPSD 99


>04_01_0196 + 2287911-2288278,2289187-2289838
          Length = 339

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 261 SRHKSLPRYH-WILSSKLWSVCLLSCGEC-*MWRVIFAKYQLLLN 389
           +RHK+L +++ W +    W++    CG C  M + +F  Y+L+ N
Sbjct: 58  ARHKNLLKFYGWCIRGHSWNILHFMCGWCWSMEKELFLVYELMNN 102


>12_01_0715 - 6230393-6231559,6233234-6234553
          Length = 828

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +1

Query: 193 DHWFSFVIPYSFLSYTTSIIFEDHVTRVYHVTIGYCHPSCGQFV----CCHVGSVECGG* 360
           DH  S   P + L    S + +  + R ++ TIG    +   +V    CCH   V CGG 
Sbjct: 21  DHASSTEAPAACLPDQASALLQ--LKRSFNATIGDYPAAFRSWVAGADCCHWDGVRCGGA 78

Query: 361 SSRNTS 378
             R TS
Sbjct: 79  GGRVTS 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,583,881
Number of Sequences: 37544
Number of extensions: 272457
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)