Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a08f
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 284 LPLDIVIQAVVSLFAVMWGVL 346
           LPL   + A++ LF + WG L
Sbjct: 216 LPLGCPVNAIMGLFVLWWGWL 236


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 392 NAIKWETQNNLPSFYIFNH 448
           N IK   QNN+P++ + NH
Sbjct: 342 NWIKGTPQNNVPNWVMGNH 360


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 562 CICYILKIVKFCHINQIVN 618
           CI  IL+ V  CH N +V+
Sbjct: 14  CIQQILESVHHCHHNGVVH 32


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 392 NAIKWETQNNLPSFYIFNHRGKAL 463
           N++    + +LP F +  HR +A+
Sbjct: 175 NSVGVSNEVSLPQFKVLGHRQRAM 198


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 392 NAIKWETQNNLPSFYIFNHRGKAL 463
           N++    + +LP F +  HR +A+
Sbjct: 114 NSVGVSNEVSLPQFKVLGHRQRAM 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,204
Number of Sequences: 438
Number of extensions: 3464
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)