Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a08f
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03345.1 68418.m00287 expressed protein                             61   5e-10
At1g03230.1 68414.m00301 extracellular dermal glycoprotein, puta...    28   5.7  
At4g15010.3 68417.m02307 mitochondrial substrate carrier family ...    27   7.5  
At4g15010.2 68417.m02306 mitochondrial substrate carrier family ...    27   7.5  
At4g15010.1 68417.m02305 mitochondrial substrate carrier family ...    27   7.5  
At3g24660.1 68416.m03096 leucine-rich repeat transmembrane prote...    27   7.5  
At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putati...    27   10.0 
At3g50440.1 68416.m05517 hydrolase, alpha/beta fold family prote...    27   10.0 

>At5g03345.1 68418.m00287 expressed protein
          Length = 104

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 28/91 (30%), Positives = 49/91 (53%)
 Frame = +2

Query: 185 VIVIIGFLSLFHTAFSATQHRSYLRITSQEFTTLPLDIVIQAVVSLFAVMWGVLNVAGNL 364
           ++ + G L L H A+S  Q+R  L+I  +EF+  P++++++ ++ L   MW  L   G  
Sbjct: 6   LVGVFGVLILSHAAYSTIQYRGLLKIMEEEFSRPPINVILELIIGLALCMWAALTFPGKF 65

Query: 365 REIPAAAELNAIKWETQNNLPSFYIFNHRGK 457
             I   ++ N   +   N+   F IFNHRG+
Sbjct: 66  LSIHPDSDENRAVFLPDNS--DFMIFNHRGR 94


>At1g03230.1 68414.m00301 extracellular dermal glycoprotein,
           putative / EDGP, putative similar to extracellular
           dermal glycoprotein EDGP precursor [Daucus carota]
           GI:285741
          Length = 434

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 280 HVTIGYCHPSCGQFVCCHVGSVECG 354
           +V+  Y  P C   VC   GS+ CG
Sbjct: 77  YVSTTYRSPRCNSAVCSRAGSIACG 101


>At4g15010.3 68417.m02307 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 378

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 339 PHMTANKLTTAWMTISNGNVVNSCDVILKYDRCCV-AEKAVWNNERKPMI 193
           P+MTA      WM    GN  ++ DV    D   +   +A+W N R  +I
Sbjct: 187 PNMTAALQEYPWMMTGTGNPPSAMDVKRPLDVASLEGYRALWRNLRSGLI 236


>At4g15010.2 68417.m02306 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 378

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 339 PHMTANKLTTAWMTISNGNVVNSCDVILKYDRCCV-AEKAVWNNERKPMI 193
           P+MTA      WM    GN  ++ DV    D   +   +A+W N R  +I
Sbjct: 187 PNMTAALQEYPWMMTGTGNPPSAMDVKRPLDVASLEGYRALWRNLRSGLI 236


>At4g15010.1 68417.m02305 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 378

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 339 PHMTANKLTTAWMTISNGNVVNSCDVILKYDRCCV-AEKAVWNNERKPMI 193
           P+MTA      WM    GN  ++ DV    D   +   +A+W N R  +I
Sbjct: 187 PNMTAALQEYPWMMTGTGNPPSAMDVKRPLDVASLEGYRALWRNLRSGLI 236


>At3g24660.1 68416.m03096 leucine-rich repeat transmembrane protein
           kinase, putative identical to putative kinase-like
           protein TMKL1 precursor GB:P33543 from [Arabidopsis
           thaliana], (Plant Mol. Biol. 23 (2), 415-421 (1993))
          Length = 674

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 371 IPAAAELNAIKWETQNNLPSFYIFNHRGKALSYDYVPTPTKADL 502
           +P   +L  I+ E    L +FY      K L YDY+P  +  DL
Sbjct: 415 LPVIRQLGRIRHENLVPLRAFYQGKRGEKLLIYDYLPNISLHDL 458


>At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putative
           similar to subunit 6b of cytochrome c oxidase
           [Arabidopsis thaliana] gi|6518353|dbj|BAA87883
          Length = 78

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
 Frame = -1

Query: 363 RLPATFNTPHMTANKLTTAWMTISNGNVVNSCDVILKYDRC-CVAEKA-VWNNERK 202
           R P T  T H     +     T + G   N C+   KY R  C  E    WN +R+
Sbjct: 15  RFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKWNEQRE 70


>At3g50440.1 68416.m05517 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 275

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 426 PHFISSITEGRHYLMIMFPHQLKQI 500
           PH +  I E  H  M+  PH+L Q+
Sbjct: 242 PHEVKRIEEAGHMAMLTKPHELSQL 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,167,071
Number of Sequences: 28952
Number of extensions: 230770
Number of successful extensions: 476
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)