Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a07f
         (609 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.5  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   6.1  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 45  NIDFYVYDLSMSFAIFYINAPYMKNITL 128
           ++DF ++D   S  +F++N  + K I L
Sbjct: 178 SLDFNIFDQVGSLGMFHVNMSHNKLINL 205


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 68  SIYEFCNFLH 97
           S YE C+FLH
Sbjct: 798 SFYEICDFLH 807


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 576 VLYIENQHLSLCPEQYYSFY 517
           V+Y ++Q + L  E YYS Y
Sbjct: 161 VVYTDHQRVELEKEFYYSRY 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,818
Number of Sequences: 336
Number of extensions: 3162
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)