Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a07f
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   1.6  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   3.7  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   5.0  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    25   6.5  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    25   6.5  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   6.5  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 372 SLKTPTSPSKNAKMEEDKQNQVILQNNVEGNDEVQVDTIEADKSDMTSSRRSSTAPDI 545
           S  +P S  +N    +  Q       N EG  +V    +++DK++   +  SS+AP +
Sbjct: 86  SSSSPASKMRNTVNLQHIQAANQKTRNAEGERKVAQRRVQSDKAEANDAAMSSSAPTV 143


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 313 LMAVLYSYGLVFIDNLTRFILEFFMYLFLLSSAVSPDLILSKSSSLKPVNCDMFY 149
           ++ + Y Y +   +   RF+ + F+Y+    S VS  L+    SS   +NC  FY
Sbjct: 39  IVCIFYVYKIALCNEYIRFLAKCFLYILRCMSTVS--LL----SSAHKMNCCNFY 87


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -2

Query: 359 IKIYAVYSIV*ILFLINGCLIFIWLGFH**FNSFYIRIFYVLVFTLIGSFARFN 198
           +K Y  + I   LF+IN  LI +   F   ++ FY  +FY+L+   I  F   N
Sbjct: 160 LKNYIAFPIC--LFVINHILILLGY-FQCSYSVFYASVFYILLGVFIRVFYLVN 210


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -3

Query: 283 VFIDNLTRFILEFFMYLFLLSSAVSPDLILSKSSSLKPVNCDMFYLFLHRY 131
           + ++ +TR++     YL    + +S DL LSK S    +N  +FY+F  R+
Sbjct: 420 IIVNMMTRWVEA---YLDQCENELSDDL-LSKHSVFYAINQSIFYIFCFRW 466


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 558 QHLSLCPEQYYSFYYLSYHSCLLR*YLLVLHHFPL 454
           QH+   PEQ +  Y+   +  + R + LV+ HF L
Sbjct: 138 QHVGNNPEQLFIDYFEHQYDLMQRLHPLVIGHFDL 172


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 277 IDNLTRFILEFFMYLFLLSSAVSPDLI-LSKSSSLKPVNCDMFYLFLHRYVRVM 119
           ID+LT  + + +  L++      P    +  S+    +NC++F + L R+VR +
Sbjct: 99  IDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGINCEIFRITLDRFVRTL 152


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -2

Query: 254 IRIFYVLVFTLIGSFARFNSFQVIFTKTCKL*HVLFVFT*ICQGYVFHIRCIN 96
           I +F +   T   S + F  +   + K+C L  +   +T +C     HI  +N
Sbjct: 2   IDLFQLTCLTSTVSISNFILYNRKYRKSCALAFLTLRYTLLCYSIPIHIHTVN 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,919
Number of Sequences: 5004
Number of extensions: 47593
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)