Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a07f
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 435 VILQNNVEGNDEVQVDT 485
           ++L NN +GN EV + T
Sbjct: 107 IVLYNNADGNYEVTIMT 123


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 435 VILQNNVEGNDEVQVDT 485
           ++L NN +GN EV + T
Sbjct: 115 IVLYNNADGNFEVTLAT 131


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 435 VILQNNVEGNDEVQVDT 485
           ++L NN +GN EV + T
Sbjct: 111 IVLYNNADGNFEVTLAT 127


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 468  EVQVDTIEADKSDMTSSRRSST 533
            +V+ D  E+D   +TSSR  S+
Sbjct: 1779 DVESDESESDPDQLTSSRTESS 1800


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 468  EVQVDTIEADKSDMTSSRRSST 533
            +V+ D  E+D   +TSSR  S+
Sbjct: 1775 DVESDESESDPDQLTSSRTESS 1796


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 435 VILQNNVEGNDEVQVDT 485
           ++L NN +GN EV + T
Sbjct: 115 IVLYNNADGNYEVTLMT 131


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 435 VILQNNVEGNDEVQVDT 485
           ++L NN +GN EV + T
Sbjct: 120 IVLYNNADGNYEVTLMT 136


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 285 KPYEYKTAINQKQ 323
           +PY+YK A++ +Q
Sbjct: 516 QPYQYKIAVHSEQ 528


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/40 (20%), Positives = 23/40 (57%)
 Frame = +3

Query: 387 TSPSKNAKMEEDKQNQVILQNNVEGNDEVQVDTIEADKSD 506
           T+P    ++E+ + + +  + +   ND++  +T E +++D
Sbjct: 288 TTPEIKKEVEDMEYDDIKTELSTGMNDDIPPETEEEEEND 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,074
Number of Sequences: 438
Number of extensions: 2796
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)