Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a06r
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761... 33 0.21
11_05_0030 - 18487272-18487544 31 1.1
12_02_1217 + 27082452-27083593,27085041-27085158 29 2.6
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 29 2.6
10_08_0058 + 14521922-14522779 29 3.4
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 3.4
09_04_0407 + 17345382-17345579,17345711-17346235 29 4.5
04_04_1086 - 30725010-30725138,30725748-30725786,30725876-307259... 28 7.8
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455... 28 7.8
>07_03_1619 +
28174991-28175804,28175945-28175968,28176075-28176170,
28176285-28176466,28176623-28176836,28177262-28177499,
28177709-28177865,28177950-28178246
Length = 673
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 448 ASTAPGGTSPFVENCQANMDGTSTSNWSFRTS 543
+STA GG PF E+C + DGT N +++++
Sbjct: 20 SSTAAGGEVPFYEDCPSTADGTYAPNSTYQSN 51
>11_05_0030 - 18487272-18487544
Length = 90
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = -2
Query: 485 STNGEVPPGAVEAGSTADGEKLYFGRVNHDG 393
ST G+ P G EAGS ADG K G V DG
Sbjct: 27 STGGDRPVGGAEAGSLADGRKR--GPVGLDG 55
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 662 VGTDADGDEIYAGRAHHEGDIVPAKVIPTKNACY 561
VG+DADGD++Y G E P P Y
Sbjct: 50 VGSDADGDDLYGGELEEEDSPRPPPPRPLSGLFY 83
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 466 RPALSRL-APQLTGRSFTSAGSIMTDALRLARSTRHTHVAITRLMAKKGAP 317
RP L+RL AP F+S+ S + RLA TRH ++ L + GAP
Sbjct: 2 RPLLARLFAPTYIAMGFSSSAS--PPSRRLAHLTRHLLLSSGELSSSVGAP 50
>10_08_0058 + 14521922-14522779
Length = 285
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 412 PK*SFSPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSS 546
P S P+A+ ++T P T P + + +D WS+R+SS
Sbjct: 7 PACSAPPAALGSSTTTPTATPPRAQFTVSLLDELGRPGWSYRSSS 51
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 407 PCRSKASPRQLWSQPRQRRAGLRHLSRT 490
P R PR++WS PR R LRH SR+
Sbjct: 347 PRRRLTPPRRMWSPPR-RPQSLRHRSRS 373
>09_04_0407 + 17345382-17345579,17345711-17346235
Length = 240
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 327 FFAIKRVIATCV*RVDLARRSASVMIDPAEVKLLPVSCGASLDSAGRDFAICRELPG 497
FF++K + R SA +DP L P D G F +CR LPG
Sbjct: 140 FFSVKSFFSRSTSRGATVASSAFAAVDPPPPLLSPAKWEGLRDCEGWPFGLCR-LPG 195
>04_04_1086 -
30725010-30725138,30725748-30725786,30725876-30725998,
30726953-30727015,30727540-30727620,30727998-30728088,
30728295-30728366,30728452-30728552,30728681-30728779,
30729132-30729329,30730792-30730824,30731084-30731192,
30732088-30732149,30732388-30732468,30732549-30732704,
30732812-30732976,30733351-30733413,30733492-30733545,
30733574-30733612,30733727-30733783,30733862-30733930,
30734022-30734135,30734216-30734284,30734821-30734927,
30735207-30735363
Length = 776
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 28 K*YLSFDIIYKCLKNNLTS*NMSYHKTNSHEIIL 129
K Y + D+ Y+ LKN +TS +MSYH T+ + ++
Sbjct: 705 KAYRANDVTYELLKN-ITSIDMSYHITSDSKKVV 737
>02_05_0869 -
32344821-32344916,32345255-32345347,32345418-32345551,
32345863-32346013,32346337-32346407,32346683-32346828,
32347172-32347221,32347552-32347628,32347716-32347776,
32347859-32347912,32347999-32348058,32348491-32348624,
32349740-32350418
Length = 601
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 597 NDVTFVVSSSRVDLITVSIGTDP 665
NDVT +SSS +D +SIG P
Sbjct: 416 NDVTIALSSSNLDKFLMSIGRQP 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,559,240
Number of Sequences: 37544
Number of extensions: 384749
Number of successful extensions: 997
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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