Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a06r
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               32   0.48 
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            31   1.1  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          29   3.4  
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               29   3.4  
SB_48327| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 424 FSPSAVEP---ASTAPGGTSPFVENCQANMDGTSTSNWSFRTSSP 549
           FSPS + P   +  +PG TSP++ +  A   G S S+ +F  SSP
Sbjct: 380 FSPSWMSPTPGSPVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSP 424


>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 646 TVMRSTREELTTKVTSFRPKSFRPKTRVIFLSV 548
           T M   +EEL++KV    P+    KT+V FLSV
Sbjct: 297 TSMDHIKEELSSKVMDLAPEGLTDKTKVPFLSV 329


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -2

Query: 614  HEGDIVPAKVIPTKNACYISFGGEEVLKDQFEVLVPSMFA----WQFSTNGEVPP-GAVE 450
            H GD++P++V  ++NA + +    E + DQ    +   FA       ST+  + P G +E
Sbjct: 4443 HHGDVIPSEVFTSENA-HEALSVSESILDQIGKFINENFAESCILALSTSDSLYPFGRIE 4501

Query: 449  AGSTA 435
            AG +A
Sbjct: 4502 AGESA 4506


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 670  PSGSVPMLTVMRSTREELTTKVTSFRPKSFRPKT 569
            PS + P  TV   TREE TTK T+   K+  P T
Sbjct: 1407 PSTTAPPTTVEDKTREEATTKPTTTTRKTTIPTT 1440


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 479 NGEVPPGAVEAGSTADGEKLYFGRVNHDGCTTPGKIHPSH 360
           NG +    + A S+  G +   GR+N  G   P KIH  H
Sbjct: 736 NGAIKASKISATSSQTGAQPSQGRLNGGGAWCPDKIHHVH 775


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 551 GGEEVLKDQFEVLVPSMFAWQF-STNGEVPPGAVEAGSTADGEKL 420
           GG E + D+  V   +   W   +  G++PPG    G   DG +L
Sbjct: 38  GGNEGIVDELHVYNTATNQWFVPAVRGDIPPGCAAYGFICDGTRL 82


>SB_48327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 577

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 184 VKHLSEKGILICHLSLNLLGLFRVN*FCDMTYFMK-LNCF*DIYI*YRSLDTILS*RLY 11
           VK   E+G+ ICH+    L    VN F D   F+K +N F D  +  ++++  +  R++
Sbjct: 20  VKWNEERGVAICHIKKKFLK--TVNHFIDSRVFLKAVNHFIDSRVFLKTVNHFIDSRVF 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,193,282
Number of Sequences: 59808
Number of extensions: 431406
Number of successful extensions: 1316
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)