Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a06r
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.5  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   6.1  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   6.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 245 AQLFNALYLLNR 210
           AQLFN L++LNR
Sbjct: 400 AQLFNGLFVLNR 411


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 582 NDFGRNDVTFVVSSSRVD 635
           NDF  NDV F +  + VD
Sbjct: 394 NDFNFNDVNFRILGANVD 411


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 463 GGTSPFVENCQANMDGTSTSNWSFRTSSPP 552
           GG  P +    +   GTS S W   T S P
Sbjct: 71  GGEQPTLRLLCSIAGGTSESQWEDVTGSTP 100


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 306 FIFCGAPFFAIKRVIATC 359
           FI C  PFF +  V A C
Sbjct: 18  FILCWLPFFTMYLVRAFC 35


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 306 FIFCGAPFFAIKRVIATC 359
           FI C  PFF +  V A C
Sbjct: 466 FILCWLPFFTMYLVRAFC 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,717
Number of Sequences: 438
Number of extensions: 3962
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)